From ac2ed85d81f322445555e01b67f758a77f2ede74 Mon Sep 17 00:00:00 2001 From: James Procter Date: Thu, 11 Jan 2024 15:30:35 +0000 Subject: [PATCH] =?utf8?q?JAL-3466=20higher=20=E2=80=98crummy=20alignment=E2?= =?utf8?q?=80=99=20threshold=20when=20deciding=20to=20create=20an=20identity?= =?utf8?q?=20mapping=20for=20PDB=20with=20exact=20length=20match=20to=20a=20?= =?utf8?q?sequence=20in=20the=20alignment?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- src/jalview/structure/StructureSelectionManager.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java index 6761cc3..9906582 100644 --- a/src/jalview/structure/StructureSelectionManager.java +++ b/src/jalview/structure/StructureSelectionManager.java @@ -673,7 +673,7 @@ public class StructureSelectionManager // Not doing SIFTS, or SIFTS failed for some reason. // first check if we should use an identity mapping - if (idLengthChain != null && maxAlignseq.getS2Coverage() < 0.5) + if (idLengthChain != null && maxAlignseq.getS2Coverage() < 0.75) { Console.info( "Assuming 3Dsi identity mapping between structure and sequence"); -- 1.7.10.2