From ad1a8c2675db1bda53a09c8acc1c560af9bc8619 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Thu, 18 Jun 2015 19:06:56 +0100 Subject: [PATCH] JAL-653 JAL-1780 JAL-1543 javadoc and comment about further refactoring --- src/jalview/io/FileParse.java | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java index 690e22a..8f5144b 100755 --- a/src/jalview/io/FileParse.java +++ b/src/jalview/io/FileParse.java @@ -50,16 +50,26 @@ public class FileParse public File inFile = null; + /** + * a viewport associated with the current file operation. May be null. May + * move to different object. + */ private AlignViewportI viewport; - public int index = 1; // sequence counter for FileParse object created from /** * specific settings for exporting data from the current context */ private AlignExportSettingI exportSettings; - // same data source + /** + * sequence counter for FileParse object created from same data source + */ + public int index = 1; + /** + * separator for extracting specific 'frame' of a datasource for formats that + * support multiple records (e.g. BLC, Stockholm, etc) + */ protected char suffixSeparator = '#'; /** -- 1.7.10.2