From ad54c1ae5bc1b931a6a0cd0b914c19cbc27fe12d Mon Sep 17 00:00:00 2001 From: tcofoegbu Date: Mon, 21 Mar 2016 11:22:50 +0000 Subject: [PATCH 1/1] merge --- examples/testdata/simpleGff3.gff | 28 ---------------------------- 1 file changed, 28 deletions(-) delete mode 100644 examples/testdata/simpleGff3.gff diff --git a/examples/testdata/simpleGff3.gff b/examples/testdata/simpleGff3.gff deleted file mode 100644 index d363bae..0000000 --- a/examples/testdata/simpleGff3.gff +++ /dev/null @@ -1,28 +0,0 @@ -##gff-version 2 -# exonerate output in gff2 format; not gff3 because -# - 'similarity' is not a Sequence Ontology term -# - attributes' name/values are separated by space ' ' not equals '=' -##source-version exonerate:protein2genome:local 2.2.0 -##date 2015-01-16 -##type DNA -# -# exonerate run with --showtargetgff generates 'features on the target' i.e. mappings to the query -# tab-delimited -# seqname source feature start end score strand frame attributes -# -seq1 exonerate:protein2genome:local gene 8 11 3652 - . gene_id 0 ; sequence seq2 ; gene_orientation . -seq1 exonerate:protein2genome:local cds 9 11 . - . -seq1 exonerate:protein2genome:local exon 9 11 . - . insertions 3 ; deletions 6 -#seq1 exonerate:protein2genome:local similarity 8 11 3652 - . alignment_id 0 ; Query seq2 ; Align 11 1 3 -seq1 exonerate:protein2genome:local similarity 9 11 3652 - . alignment_id 0 ; Query seq2 ; Align 11 1 3 -# -# appending FASTA sequences is strictly a GFF3 format feature -# but Jalview is able to handle this mixture of GFF2 / GFF3 :-) -# -##FASTA ->seq1 -ACTACGACACGACGACGACGACG ->seq2 -CDEQEATGTQDAQEQAQC - - -- 1.7.10.2