From ae4fb26bb536d6ee4927919226daf20a8366e77a Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Wed, 25 Aug 2021 18:09:37 +0100 Subject: [PATCH] JAL-3829 3d-beacons has a custom alignment retrieval model but re-uses the parseAlignment method from sequence fetcher --- src/jalview/gui/SequenceFetcher.java | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java index dab42b5..7f9d4c7 100755 --- a/src/jalview/gui/SequenceFetcher.java +++ b/src/jalview/gui/SequenceFetcher.java @@ -803,8 +803,15 @@ public class SequenceFetcher extends JPanel implements Runnable { return "Retrieved from " + database.getSelectedItem(); } - - AlignmentI parseResult(AlignmentI al, String title, + /** + * constructs an alignment frame given the data and metadata + * @param al + * @param title + * @param currentFileFormat + * @param preferredFeatureColours + * @return the alignment + */ + public AlignmentI parseResult(AlignmentI al, String title, FileFormatI currentFileFormat, FeatureSettingsModelI preferredFeatureColours) { -- 1.7.10.2