From af94a4ec352bed730ba82f9e3bdcc7a34656b1e4 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 18 Feb 2005 12:26:49 +0000
Subject: [PATCH] treepanel is now internalframe

---
 src/jalview/gui/AlignFrame.java |   10 +++++----
 src/jalview/gui/TreePanel.java  |   46 ++++++++++++++++++++++++++++++++-------
 2 files changed, 44 insertions(+), 12 deletions(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index a20a3fe..ebaacda 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -52,7 +52,6 @@ public class AlignFrame extends GAlignFrame
      }
    });
 
-   AlignmentUtil.fetchSequenceFeatures(al, alignPanel);
   }
 
   protected void saveAs_actionPerformed(ActionEvent e)
@@ -611,6 +610,11 @@ public class AlignFrame extends GAlignFrame
   public void sequenceFeatures_actionPerformed(ActionEvent evt)
   {
     viewport.showSequenceFeatures(sequenceFeatures.isSelected());
+    if(viewport.showSequenceFeatures && !((Alignment)viewport.alignment).featuresAdded)
+    {
+         AlignmentUtil.fetchSequenceFeatures( viewport.alignment , alignPanel);
+         ((Alignment)viewport.alignment).featuresAdded = true;
+    }
     alignPanel.RefreshPanels();
   }
 
@@ -973,7 +977,6 @@ if ( viewport.getConservationSelected() )
       return;
     }
 
-    JInternalFrame frame = new javax.swing.JInternalFrame();
     TreePanel tp=null;
    if (viewport.getSelection() != null && viewport.getSelection().size() > 3)
    {
@@ -986,8 +989,7 @@ if ( viewport.getConservationSelected() )
                          type, pwType,  0, viewport.alignment.getWidth());
    }
 
-   frame.setContentPane(tp);
-   Desktop.addInternalFrame(frame, title, 600, 500);
+   Desktop.addInternalFrame(tp, title, 600, 500);
   }
 
 
diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index 936eebe..4b605bf 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -9,6 +9,9 @@ import java.util.*;
 import java.io.*;
 import jalview.util.*;
 import javax.swing.*;
+import java.awt.print.*;
+import java.awt.*;
+
 
 
 public class TreePanel extends GTreePanel
@@ -250,25 +253,52 @@ public void propertiesInit() {
 
   }
 
-  public void showDistanceCheckbox_actionPerformed(ActionEvent e)
+
+  protected void saveMenu_actionPerformed(ActionEvent e)
   {
-    treeCanvas.setShowDistances(showDistanceCheckbox.isSelected());
+
+  }
+
+  protected void printMenu_actionPerformed(ActionEvent e)
+  {
+
+    //Putting in a thread avoids Swing painting problems
+    treeCanvas.startPrinting();
   }
 
-  public void fontSizeCombobox_actionPerformed(ActionEvent e)
+  protected void fontSize_actionPerformed(ActionEvent e)
   {
     if( treeCanvas==null )
      return;
 
-    int size = Integer.parseInt( fontSizeCombobox.getSelectedItem().toString() );
-        treeCanvas.setFontSize( size );
-
+   String size = fontSize.getText().substring( fontSize.getText().indexOf("-")+1);
+
+   Object selection = JOptionPane.showInternalInputDialog(Desktop.desktop,
+                               "Select font size",
+                               "Font size",
+                               JOptionPane.QUESTION_MESSAGE,
+                               null, new String[]{"1","2","4","6","8","10","12","14","16","18","20"}
+                               ,"Font Size - "+size);
+   if(selection!=null)
+   {
+     fontSize.setText("Font Size - " + selection);
+
+     int i = Integer.parseInt(selection.toString());
+     treeCanvas.setFontSize(i);
+   }
     scrollPane.setViewportView(treeCanvas);
+
+  }
+
+  protected void distanceMenu_actionPerformed(ActionEvent e)
+  {
+    treeCanvas.setShowDistances(distanceMenu.isSelected());
   }
 
-  public void bootStrapCheckBox_actionPerformed(ActionEvent e)
+  protected void bootstrapMenu_actionPerformed(ActionEvent e)
   {
-    treeCanvas.setShowBootstrap(bootStrapCheckBox.isSelected());
+    treeCanvas.setShowBootstrap(bootstrapMenu.isSelected());
   }
 
+
 }
-- 
1.7.10.2