From b06fdb4903a91fd56543db123d491f494c42501c Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 29 Aug 2005 13:59:30 +0000
Subject: [PATCH 1/1] load sequenceURLLinks static method

---
 src/jalview/gui/Preferences.java |   36 ++++++++++++++++++++----------------
 1 file changed, 20 insertions(+), 16 deletions(-)

diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index bf26c0d..bec82a5 100755
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -45,8 +45,26 @@ import jalview.bin.Cache;
 public class Preferences extends GPreferences
 {
     /** Holds name and link separated with | character. Sequence ID must be $SEQUENCE_ID$ */
-    public static Vector sequenceURLLinks = new Vector();
-    static { sequenceURLLinks.addElement("SRS|http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2");}
+    public static Vector sequenceURLLinks;
+    static
+    {
+      String string = Cache.getDefault("SEQUENCE_LINKS",
+                                       "SRS|http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2");
+      sequenceURLLinks = new Vector();
+
+      try
+      {
+        StringTokenizer st = new StringTokenizer(string, "|");
+        while (st.hasMoreElements())
+        {
+          sequenceURLLinks.addElement(st.nextToken() + "|" + st.nextToken());
+        }
+      }
+      catch (Exception ex)
+      {
+        System.out.println(ex + "\nError parsing sequence links");
+      }
+    }
     Vector nameLinks, urlLinks;
 
     JInternalFrame frame;
@@ -124,20 +142,6 @@ public class Preferences extends GPreferences
   /****************************************************
    * Set up Connections
    */
-
-      string = Cache.getDefault("SEQUENCE_LINKS",
-                            "SRS|http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2");
-      sequenceURLLinks = new Vector();
-
-        try{
-          StringTokenizer st = new StringTokenizer(string, "|");
-          while (st.hasMoreElements())
-          {
-            sequenceURLLinks.addElement(st.nextToken() + "|" + st.nextToken());
-          }
-        }catch(Exception ex)
-        {System.out.println(ex+"\nError parsing sequence links");}
-
         nameLinks = new Vector();
         urlLinks = new Vector();
         for(int i=0; i<sequenceURLLinks.size(); i++)
-- 
1.7.10.2