From b08ae4419c138647b696f440e09a75a39e63383e Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 27 Oct 2005 11:19:10 +0000
Subject: [PATCH] Allow old style groups file

---
 src/jalview/gui/AlignFrame.java |    9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index f2d0b69..7b394a3 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -217,11 +217,18 @@ public class AlignFrame
 
           type = st.nextToken();
 
+          if (fr.getColour(type) == null)
+          {
+            // Probably the old style groups file
+            UserColourScheme ucs = new UserColourScheme(type);
+            fr.setColour(type, ucs.findColour("A"));
+          }
+
+
           sf = new SequenceFeature(type, desc, "", start, end);
 
           seq.addSequenceFeature(sf);
 
-          System.out.println(sf.getType()+" "+sf.getBegin());
 
          // sg = new SequenceGroup(text, ucs, true, true, false, start, end);
          // sg.addSequence(seq, false);
-- 
1.7.10.2