From b12967492efea74762e50ac34f6607ed56d29994 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 16 Sep 2015 18:31:59 +0100
Subject: [PATCH] JAL-1612 JAL-1439 JAL-1845 OSX Installers set
 Xdock:name=Jalview and Xdock:icon=<install path>/..icn file
 in launchAnywhere

---
 utils/InstallAnywhere/Jalview.iap_xml |  265 +++++++++++++++++++++++++++------
 1 file changed, 222 insertions(+), 43 deletions(-)

diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index 18c7e75..cd9987c 100755
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -1,8 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!-- This script was automatically generated using InstallAnywhere 2014 Professional, Build 4783
      STATUS: Fully Functional LICENSED Edition
-     DATE:   Tue Dec 02 16:16:02 GMT 2014 -->
-<!--
  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
  * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
@@ -19,8 +17,8 @@
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
--->
-<InstallAnywhere_Deployment_Project increments="5299">
+     DATE:   Wed Sep 16 18:09:53 BST 2015 -->
+<InstallAnywhere_Deployment_Project increments="5904">
 	<!-- ** DO NOT EDIT ** Essential authorization and configuration data ** DO NOT EDIT ** -->
 	<essentialScriptInfo>
 		<versionID major="16" minor="0" revision="0"/>
@@ -28,9 +26,9 @@
 		<scriptID>12,42,11,85,78,76,73,67,69,78,83,69,68</scriptID>
 		<buildID>3,13,71,76,105,110,117,120,44,32,50,46,54,46,51,50,45,51,53,56,46,54,46,50,46,101,108,54,46,120,56,54,95,54,52,44,32,97,109,100,54,52,59,32,74,97,118,97,32,49,46,55,46,48,95,54,48,44,32,79,114,97,99,108,101,32,67,111,114,112,111,114,97,116,105,111,110,44,32,104,116,116,112,58,47,47,106,97,118,97,46,111,114,97,99,108,101,46,99,111,109,47,59,32,101,110,44,32,85,110,107,110,111,119,110,59,32,73,83,79,45,56,56,53,57,45,49</buildID>
 		<!-- The authorizationID may change between project saves and builds.  This does not effect the integrity of the project, nor do changes in this value represent changes in the actual InstallAnywhere project. -->
-		<authorizationID>1,0,0,64,13,-64,-128,0,80,127,118,101,93,105,116,96,121,48,48,49,56,52,67,98,113,112,112,37,82,101,96,63,55,-11,2,9,1,105,27,10,1,0,0</authorizationID>
+		<authorizationID>1,0,0,64,-35,32,64,-48,80,127,118,101,93,105,116,96,121,48,48,49,56,52,67,98,113,112,112,37,82,101,96,63,55,-11,2,9,13,114,23,15,1,0,0</authorizationID>
 	</essentialScriptInfo>
-	<installationObjects uniqueObjects="225">
+	<installationObjects uniqueObjects="243">
 		<object class="com.zerog.ia.installer.Installer" objectID="fe7d63eda660">
 			<property name="belongsToUninstallPhase">
 				<boolean>false</boolean>
@@ -280,6 +278,19 @@ and any path to a file to save to the file]]></string>
 									</property>
 								</object>
 							</method>
+							<method name="addElement">
+								<object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="e9482ad387eb">
+									<property name="propertyValue">
+										<string><![CDATA[$PLATFORM_JVM_OPTS$]]></string>
+									</property>
+									<property name="propertyName">
+										<string><![CDATA[lax.nl.java.option.additional]]></string>
+									</property>
+									<property name="propertyComment">
+										<string><![CDATA[specific launch options for the platform]]></string>
+									</property>
+								</object>
+							</method>
 						</object>
 					</property>
 					<property name="shouldUninstall">
@@ -371,7 +382,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[jalview.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>4232225</long>
+								<long>5584573</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -475,7 +486,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[xercesImpl.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>1010204</long>
+								<long>1367760</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -631,7 +642,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[xml-apis.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>124344</long>
+								<long>220536</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1047,7 +1058,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[slf4j-api-1.7.7.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>348699</long>
+								<long>29257</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1058,8 +1069,8 @@ and any path to a file to save to the file]]></string>
 							<property name="ruleExpression">
 								<string><![CDATA[]]></string>
 							</property>
-						</object>				
-					</method>		
+						</object>
+					</method>
 					<method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244fff00ffff">
 							<property name="belongsToUninstallPhase">
@@ -1099,7 +1110,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[jsoup-1.8.1.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>348699</long>
+								<long>300844</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1151,7 +1162,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[log4j-to-slf4j-2.0-rc2.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>348699</long>
+								<long>15996</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1203,7 +1214,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[slf4j-log4j12-1.7.7.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>348699</long>
+								<long>8870</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1255,7 +1266,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[Jmol-14.2.14_2015.06.11.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>4938027</long>
+								<long>5417196</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1463,7 +1474,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>133065</long>
+								<long>601804</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1879,7 +1890,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[VARNAv3-93.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>663408</long>
+								<long>695802</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2347,7 +2358,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>16046</long>
+								<long>660179</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2515,7 +2526,7 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[]]></string>
 							</property>
 						</object>
-					</method>					
+					</method>
 					<method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="13936efeefab93">
 							<property name="belongsToUninstallPhase">
@@ -3171,6 +3182,94 @@ You may cancel this installation at any time by clicking the 'Cancel' button.]]>
 						</object>
 					</method>
 					<method name="addElement">
+						<object class="com.zerog.ia.installer.actions.EditVariableTable" objectID="ea739b658d07">
+							<property name="belongsToUninstallPhase">
+								<boolean>false</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[CP904]]></string>
+							</property>
+							<property name="name">
+								<string><![CDATA[PLATFORM_JVM_OPTS]]></string>
+							</property>
+							<property name="value">
+								<string><![CDATA[-Xdock:name=Jalview -Xdock:icon=$USER_INSTALL_DIR$/Jalview.app/Contents/Resources/LaunchAnywhere.icns]]></string>
+							</property>
+							<property name="passByValue">
+								<boolean>true</boolean>
+							</property>
+							<property name="substituteUnknownVariable">
+								<boolean>false</boolean>
+							</property>
+							<rules logicalOperation="AND">
+								<object class="com.zerog.ia.installer.rules.PlatformChk" objectID="ea74fe6b8d07">
+									<property name="belongsToUninstallPhase">
+										<boolean>false</boolean>
+									</property>
+									<property name="rollbackEnabledCancel">
+										<boolean>true</boolean>
+									</property>
+									<property name="rollbackEnabledError">
+										<boolean>true</boolean>
+									</property>
+									<property name="ruleExpression">
+										<string><![CDATA[]]></string>
+									</property>
+									<property name="installOnPlatformList">
+										<object class="java.util.Vector">
+											<method name="addElement">
+												<string><![CDATA[Mac OS X]]></string>
+											</method>
+										</object>
+									</property>
+									<property name="doNotInstallOnPlatformList">
+										<object class="java.util.Vector">
+											<method name="addElement">
+												<string><![CDATA[^Windows.*]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[Solaris]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[SunOS]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[HP-UX]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[Linux]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[AIX]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[FreeBSD]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[NetWare]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[OS/400]]></string>
+											</method>
+											<method name="addElement">
+												<string><![CDATA[Unlisted Platforms]]></string>
+											</method>
+										</object>
+									</property>
+									<property name="ruleId">
+										<string><![CDATA[CP904]]></string>
+									</property>
+								</object>
+							</rules>
+						</object>
+					</method>
+					<method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallSummary" objectID="fe7d64bfa66c">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
@@ -4039,7 +4138,7 @@ Press "Done" to quit the installer.]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="buildOutputLocation">
-								<string><![CDATA[/home/cruisecontrol/checkout/release-jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
+								<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
 							</property>
 							<property name="relatedProjectSettings">
 								<object class="com.zerog.ia.installer.RelatedProjectSettings" objectID="97f2363da6ac">
@@ -4945,7 +5044,7 @@ Press "Done" to quit the installer.]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="credentialInformation">
-								<object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="1f4abcab8706">
+								<object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="eaa38cb2933b">
 									<property name="hostName">
 										<string><![CDATA[]]></string>
 									</property>
@@ -5071,7 +5170,7 @@ Press "Done" to quit the installer.]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.project.build.last.date]]></string>
-						<string><![CDATA[21 October 2013 14:27:40 o'clock BST]]></string>
+						<string><![CDATA[16 September 2015 18:09:53 o'clock BST]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.build.platform.windows.vm]]></string>
@@ -5139,7 +5238,7 @@ Press "Done" to quit the installer.]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.project.save.last.date]]></string>
-						<string><![CDATA[02 December 2014 16:16:01 o'clock GMT]]></string>
+						<string><![CDATA[16 September 2015 18:09:53 o'clock BST]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.build.options.optimization.platform.cdrom]]></string>
@@ -5417,13 +5516,13 @@ Press "Done" to quit the installer.]]></string>
 								<int>2</int>
 							</property>
 							<property name="minor">
-								<int>8</int>
+								<int>9</int>
 							</property>
 							<property name="revision">
-								<int>2</int>
+								<int>0</int>
 							</property>
 							<property name="subRevision">
-								<int>0</int>
+								<int>1</int>
 							</property>
 						</object>
 					</property>
@@ -5454,7 +5553,7 @@ Press "Done" to quit the installer.]]></string>
 						<string><![CDATA[jalview-discuss@jalview.org]]></string>
 					</property>
 					<property name="copyright">
-						<string><![CDATA[2014]]></string>
+						<string><![CDATA[2015]]></string>
 					</property>
 					<property name="license">
 						<string><![CDATA[Commercial]]></string>
@@ -7018,11 +7117,9 @@ and any path to a file to read from that file]]></string>
 										<object refID="24485f8aa671"/>
 										<object refID="24485f89a672"/>
 										<object refID="24485f8aa672"/>
-
 										<object refID="244fff00ffff"/>
-					                    <object refID="244ffffaa672"/>
-					                    <object refID="244f00faa672"/>
-
+										<object refID="244ffffaa672"/>
+										<object refID="244f00faa672"/>
 										<object refID="24485f8ba672"/>
 										<object refID="24485f8aa673"/>
 										<object refID="24485f8ba673"/>
@@ -7181,7 +7278,7 @@ and any path to a file to read from that file]]></string>
 												<string><![CDATA[building.html]]></string>
 											</property>
 											<property name="fileSize">
-												<long>4444</long>
+												<long>4447</long>
 											</property>
 											<property name="macBinary">
 												<boolean>false</boolean>
@@ -7209,8 +7306,6 @@ and any path to a file to read from that file]]></string>
 										<object refID="f46c2f42ab93"/>
 										<object refID="1f46cffffab93"/>
 										<object refID="1f46efeefab93"/>
-										<object refID="841f46efeefab93"/>
-										<object refID="9a1f46efeefab93"/>
 										<object refID="1936efeefab93"/>
 										<object refID="10936efeefab93"/>
 										<object refID="11936efeefab93"/>
@@ -7423,7 +7518,7 @@ and any path to a file to read from that file]]></string>
 												<string><![CDATA[exampleFile_2_7.jar]]></string>
 											</property>
 											<property name="fileSize">
-												<long>107135</long>
+												<long>107635</long>
 											</property>
 											<property name="macBinary">
 												<boolean>false</boolean>
@@ -7467,7 +7562,7 @@ and any path to a file to read from that file]]></string>
 												<string><![CDATA[1gaq.txt]]></string>
 											</property>
 											<property name="fileSize">
-												<long>56649</long>
+												<long>55958</long>
 											</property>
 											<property name="macBinary">
 												<boolean>false</boolean>
@@ -7508,7 +7603,7 @@ and any path to a file to read from that file]]></string>
 												<string><![CDATA[uniref50.fa]]></string>
 											</property>
 											<property name="fileSize">
-												<long>3039</long>
+												<long>2979</long>
 											</property>
 											<property name="macBinary">
 												<boolean>false</boolean>
@@ -7590,7 +7685,7 @@ and any path to a file to read from that file]]></string>
 												<string><![CDATA[exampleFeatures.txt]]></string>
 											</property>
 											<property name="fileSize">
-												<long>31397</long>
+												<long>31399</long>
 											</property>
 											<property name="macBinary">
 												<boolean>false</boolean>
@@ -7672,7 +7767,7 @@ and any path to a file to read from that file]]></string>
 												<string><![CDATA[ferredoxin.nw]]></string>
 											</property>
 											<property name="fileSize">
-												<long>392</long>
+												<long>391</long>
 											</property>
 											<property name="macBinary">
 												<boolean>false</boolean>
@@ -7772,8 +7867,8 @@ and any path to a file to read from that file]]></string>
 												<object refID="24485f89a672"/>
 												<object refID="24485f8aa672"/>
 												<object refID="244fff00ffff"/>
-						                        <object refID="244ffffaa672"/>
-						                        <object refID="244f00faa672"/>
+												<object refID="244ffffaa672"/>
+												<object refID="244f00faa672"/>
 												<object refID="24485f8ba672"/>
 												<object refID="24485f8aa673"/>
 												<object refID="24485f8ba673"/>
@@ -7845,7 +7940,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="totalSize">
-												<long>1</long>
+												<long>30621</long>
 											</property>
 											<property name="macBinary">
 												<boolean>false</boolean>
@@ -7907,6 +8002,88 @@ and any path to a file to read from that file]]></string>
 												<object refID="f44fc68baba3"/>
 											</visualChildren>
 										</object>
+										<object class="com.zerog.ia.installer.actions.InstallFile" objectID="ea43799f8a5c">
+											<property name="belongsToUninstallPhase">
+												<boolean>false</boolean>
+											</property>
+											<property name="rollbackEnabledCancel">
+												<boolean>true</boolean>
+											</property>
+											<property name="rollbackEnabledError">
+												<boolean>true</boolean>
+											</property>
+											<property name="ruleExpression">
+												<string><![CDATA[]]></string>
+											</property>
+											<property name="unixPermissions">
+												<string><![CDATA[664]]></string>
+											</property>
+											<property name="sourceName">
+												<string><![CDATA[THIRDPARTYLIBS]]></string>
+											</property>
+											<property name="overrideUnixPermissions">
+												<boolean>false</boolean>
+											</property>
+											<property name="sourcePath">
+												<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/]]></string>
+											</property>
+											<property name="shouldUninstall">
+												<boolean>true</boolean>
+											</property>
+											<property name="destinationName">
+												<string><![CDATA[THIRDPARTYLIBS]]></string>
+											</property>
+											<property name="fileSize">
+												<long>2612</long>
+											</property>
+											<property name="macBinary">
+												<boolean>false</boolean>
+											</property>
+											<property name="targetCheckKind">
+												<int>0</int>
+											</property>
+										</object>
+										<object class="com.zerog.ia.installer.actions.InstallFile" objectID="ea4379a48a5c">
+											<property name="belongsToUninstallPhase">
+												<boolean>false</boolean>
+											</property>
+											<property name="rollbackEnabledCancel">
+												<boolean>true</boolean>
+											</property>
+											<property name="rollbackEnabledError">
+												<boolean>true</boolean>
+											</property>
+											<property name="ruleExpression">
+												<string><![CDATA[]]></string>
+											</property>
+											<property name="unixPermissions">
+												<string><![CDATA[664]]></string>
+											</property>
+											<property name="sourceName">
+												<string><![CDATA[AUTHORS]]></string>
+											</property>
+											<property name="overrideUnixPermissions">
+												<boolean>false</boolean>
+											</property>
+											<property name="sourcePath">
+												<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/]]></string>
+											</property>
+											<property name="shouldUninstall">
+												<boolean>true</boolean>
+											</property>
+											<property name="destinationName">
+												<string><![CDATA[AUTHORS]]></string>
+											</property>
+											<property name="fileSize">
+												<long>809</long>
+											</property>
+											<property name="macBinary">
+												<boolean>false</boolean>
+											</property>
+											<property name="targetCheckKind">
+												<int>0</int>
+											</property>
+										</object>
 									</installChildren>
 								</object>
 								<object class="com.zerog.ia.installer.InstallComponent" objectID="fe7d6497a66b">
@@ -8322,6 +8499,8 @@ and any path to a file to read from that file]]></string>
 								<object refID="24485f85a670"/>
 								<object refID="f44fc598aba0"/>
 								<object refID="094ab0d49607"/>
+								<object refID="ea43799f8a5c"/>
+								<object refID="ea4379a48a5c"/>
 							</visualChildren>
 						</object>
 						<object class="com.zerog.ia.installer.GhostDirectory" objectID="3cd94e29a677">
-- 
1.7.10.2