From b1e47fe0d3fed7ed7cd9040ba570db121502ba96 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 3 Oct 2006 09:17:40 +0000
Subject: [PATCH] upperCaseBold

---
 src/jalview/appletgui/AlignViewport.java |   18 +++++++++++++++++-
 1 file changed, 17 insertions(+), 1 deletion(-)

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 87753f4..fc46386 100755
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -50,6 +50,7 @@ public class AlignViewport
   boolean showConservation = true;
   boolean showQuality = true;
   boolean showConsensus = true;
+  boolean upperCasebold = false;
 
   boolean colourAppliesToAllGroups = true;
   ColourSchemeI globalColourScheme = null;
@@ -79,7 +80,7 @@ public class AlignViewport
 
   // The following vector holds the features which are
  // currently visible, in the correct order or rendering
-  Hashtable featuresDisplayed;
+  public Hashtable featuresDisplayed;
 
   boolean hasHiddenColumns = false;
   boolean hasHiddenRows = false;
@@ -147,6 +148,14 @@ public class AlignViewport
       {
         showConsensus = Boolean.valueOf(param).booleanValue();
       }
+
+      param = applet.getParameter("upperCase");
+      if (param != null)
+      {
+        if(param.equalsIgnoreCase("bold"))
+          upperCasebold = true;
+      }
+
     }
     // We must set conservation and consensus before setting colour,
     // as Blosum and Clustal require this to be done
@@ -493,6 +502,13 @@ public class AlignViewport
     java.awt.FontMetrics fm = nullFrame.getGraphics().getFontMetrics(font);
     setCharHeight(fm.getHeight());
     charWidth = fm.charWidth('M');
+
+    if(upperCasebold)
+    {
+      Font f2 = new Font(f.getName(), Font.BOLD, f.getSize());
+      fm = nullFrame.getGraphics().getFontMetrics(f2);
+      charWidth = fm.stringWidth("MMMMMMMMMMM") / 10;
+    }
   }
 
   public Font getFont()
-- 
1.7.10.2