From b21bf4b49df495a19483f38829e1a9c572907edf Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Wed, 10 Apr 2019 14:56:32 +0100 Subject: [PATCH] JAL-3033 and more classes for examples core --- classlists/jvexamplefile.txt | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/classlists/jvexamplefile.txt b/classlists/jvexamplefile.txt index a980e32..ae01fe1 100644 --- a/classlists/jvexamplefile.txt +++ b/classlists/jvexamplefile.txt @@ -1,3 +1,6 @@ + +com/stevesoft/pat/Any.js +com/stevesoft/pat/Bracket.js com/stevesoft/pat/Branch.js com/stevesoft/pat/CaseMgr.js com/stevesoft/pat/DotMulti.js @@ -20,10 +23,12 @@ com/stevesoft/pat/Pattern.js com/stevesoft/pat/PatternSub.js com/stevesoft/pat/Pthings.js com/stevesoft/pat/Range.js +com/stevesoft/pat/RegHolder.js com/stevesoft/pat/RegOpt.js com/stevesoft/pat/RegRes.js com/stevesoft/pat/Regex.js com/stevesoft/pat/ReplaceRule.js +com/stevesoft/pat/Replacer.js com/stevesoft/pat/Rthings.js com/stevesoft/pat/Skip.js com/stevesoft/pat/StrPos.js @@ -232,10 +237,10 @@ jalview/gui/ViewSelectionMenu.js jalview/io/AlignFile.js jalview/io/AlignmentFileReaderI.js jalview/io/AlignmentFileWriterI.js +jalview/io/AnnotationFile.js jalview/io/AppletFormatAdapter.js jalview/io/DataSourceType.js jalview/io/FastaFile.js -com/stevesoft/pat/Bracket.js jalview/io/FileFormat.js jalview/io/FileFormatI.js jalview/io/FileFormats.js @@ -243,15 +248,18 @@ jalview/io/FileLoader.js jalview/io/FileParse.js jalview/io/FormatAdapter.js jalview/io/IdentifyFile.js +jalview/io/JPredFile.js jalview/io/JalviewFileChooser.js jalview/io/JalviewFileFilter.js jalview/io/JalviewFileView.js +jalview/io/JnetAnnotationMaker.js jalview/io/NewickFile.js jalview/io/PDBFeatureSettings.js jalview/io/PIRFile.js jalview/io/ScoreMatrixFile.js jalview/io/SequenceAnnotationReport.js jalview/io/StructureFile.js +jalview/io/TCoffeeScoreFile.js jalview/io/cache/JvCacheableInputBox.js jalview/javascript/json/JSON.js jalview/javascript/log4j/ConsoleAppender.js @@ -390,6 +398,7 @@ jalview/xml/binding/jalview/Annotation.js jalview/xml/binding/jalview/AnnotationElement.js jalview/xml/binding/jalview/Feature.js jalview/xml/binding/jalview/JalviewModel.js +jalview/xml/binding/jalview/ObjectFactory.js jalview/xml/binding/jalview/Pdbentry.js jalview/xml/binding/jalview/Sequence.js jalview/xml/binding/jalview/SequenceSet.js @@ -822,6 +831,7 @@ javax/xml/bind/annotation/adapters/CollapsedStringAdapter.js javax/xml/bind/annotation/adapters/XmlAdapter.js javax/xml/bind/helpers/AbstractUnmarshallerImpl.js javax/xml/bind/helpers/DefaultValidationEventHandler.js +javax/xml/datatype/DatatypeFactory.js javax/xml/datatype/XMLGregorianCalendar.js javax/xml/namespace/QName.js javax/xml/stream/XMLInputFactory.js @@ -848,6 +858,7 @@ net/miginfocom/layout/UnitValue.js net/miginfocom/swing/MigLayout.js net/miginfocom/swing/SwingComponentWrapper.js net/miginfocom/swing/SwingContainerWrapper.js +org/apache/xerces/jaxp/datatype/DatatypeFactoryImpl.js org/apache/xerces/jaxp/datatype/XMLGregorianCalendarImpl.js org/jmol/adapter/readers/cif/CifReader.js org/jmol/adapter/readers/cif/MMCifReader.js @@ -1161,6 +1172,7 @@ swingjs/plaf/TextListener.js swingjs/xml/JSJAXBClass.js swingjs/xml/JSJAXBContext.js swingjs/xml/JSJAXBContextFactory.js +swingjs/xml/JSJAXBDatatypeFactory.js swingjs/xml/JSJAXBField.js swingjs/xml/JSJAXBUnmarshaller.js swingjs/xml/JSSAXAttributes.js -- 1.7.10.2