From b27c65973d5997828f2331df8798b1d212838d8c Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Mon, 22 Aug 2005 15:40:28 +0000
Subject: [PATCH] fixed uniquify seq[]

---
 src/jalview/analysis/SeqsetUtils.java |   17 ++++++++---------
 1 file changed, 8 insertions(+), 9 deletions(-)

diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index 78f7278..662322a 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -36,6 +36,7 @@ import jalview.datamodel.*;
  */
 public class SeqsetUtils
 {
+
   /**
    * Store essential properties of a sequence in a hashtable for later recovery
    *  Keys are Name, Start, End, SeqFeatures, PdbId
@@ -116,20 +117,18 @@ public class SeqsetUtils
     Hashtable map = new Hashtable();
     String[] un_names = new String[sequences.length];
 
-    if (!write_names)
+    for (int i = 0; i < sequences.length; i++)
     {
-      for (int i = 0; i < sequences.length; i++)
-      {
-        String safename = new String("Sequence" + i);
-        map.put(safename, SeqCharacterHash(sequences[i]));
+      String safename = unique_name(i);
+      map.put(safename, SeqCharacterHash(sequences[i]));
 
-        if (write_names)
-        {
-          sequences[i].setName(safename);
-        }
+      if (write_names)
+      {
+        sequences[i].setName(safename);
       }
     }
 
+
     return map;
   }
 
-- 
1.7.10.2