From b340b88bb94800eae4cdbc0b1558ca2eb4c85cfa Mon Sep 17 00:00:00 2001 From: kjvdheide Date: Fri, 2 Feb 2018 14:20:45 +0000 Subject: [PATCH] JAL-2890 minor name changes --- src/jalview/ext/cipres/CipresJob.java | 16 ++-------------- src/jalview/ext/cipres/CipresQueryBuilder.java | 2 +- 2 files changed, 3 insertions(+), 15 deletions(-) diff --git a/src/jalview/ext/cipres/CipresJob.java b/src/jalview/ext/cipres/CipresJob.java index d8dfd60..45e620a 100644 --- a/src/jalview/ext/cipres/CipresJob.java +++ b/src/jalview/ext/cipres/CipresJob.java @@ -14,9 +14,9 @@ public class CipresJob { private final CiJob job; - protected CipresJob(CiJob jobResults) + protected CipresJob(CiJob cipresJob) { - job = jobResults; + job = cipresJob; } public void show(boolean message) @@ -40,18 +40,6 @@ public class CipresJob return job.listResults(finalResults); } - public void getNewickTree(boolean finalResults) - throws CiCipresException { - Collection results = job.listResults(finalResults); - - for (CiResultFile result : results) - { - System.out.println(result.getName()); - - } - - } - public void downloadResults(File location, boolean finalResults) throws CiCipresException, IOException { diff --git a/src/jalview/ext/cipres/CipresQueryBuilder.java b/src/jalview/ext/cipres/CipresQueryBuilder.java index baa36d9..958cf41 100644 --- a/src/jalview/ext/cipres/CipresQueryBuilder.java +++ b/src/jalview/ext/cipres/CipresQueryBuilder.java @@ -200,7 +200,7 @@ public class CipresQueryBuilder { ErrorData ed = ce.getErrorData(); System.out.println( - "Cipres error in submitted job, code=" + "Cipres error while submitting job, code=" + ed.code + ", message=" + ed.displayMessage); // invalid parameters shouldn't be possible here but just in case. -- 1.7.10.2