From b574731bf4a1b497e7d9db25df0961b9c21899d5 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Fri, 21 Aug 2009 11:15:13 +0000
Subject: [PATCH] reversed order of addition of group consensus and
 conservation

---
 src/jalview/gui/AlignmentPanel.java |    8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 3316227..9c2cbdd 100755
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -1346,15 +1346,15 @@ public class AlignmentPanel extends GAlignmentPanel implements
       updateCalcs = false;
       sg = (SequenceGroup) gr.elementAt(g);
 
-      if (cons)
+      if (conv)
       {
         updateCalcs = true;
-        av.alignment.addAnnotation(sg.getConsensus(),0);
+        av.alignment.addAnnotation(sg.getConservationRow(),0);
       }
-      if (conv)
+      if (cons)
       {
         updateCalcs = true;
-        av.alignment.addAnnotation(sg.getConservationRow(),0);
+        av.alignment.addAnnotation(sg.getConsensus(),0);
       }
       // refresh the annotation rows
       if (updateCalcs)
-- 
1.7.10.2