From b61cc2dcede0bede317db362472333115756b8c6 Mon Sep 17 00:00:00 2001 From: cmzmasek Date: Thu, 18 Aug 2016 11:33:54 -0700 Subject: [PATCH] 0.9916 beta --- .../aptx_configuration_files/_aptx_configuration_file | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file index 8236aa2..a7230a4 100644 --- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file +++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file @@ -32,13 +32,10 @@ native_ui: ? # # Show branch length branch values: 'show_branch_length_values': values: 'yes'/'no' # -# Do/do not line up cladogram display: 'non_lined_up_cladogram': values: 'yes'/'no' -# # Cladogram display type: 'cladogram_type' -# Example: 'cladogram_type: ext_node_sum_dep' -# The three possible values are: non_lined_up -# ext_node_sum_dep -# total_node_sum_dep (for "uniform" branch lengths) +# Example: 'cladogram_type: non_lined_up' +# The three possible values are: lined_up +# non_lined_up # # Default line width for PDF export: 'pdf_export_line_wdith': # Example: 'pdf_export_line_width: 0.5' @@ -159,7 +156,7 @@ font_size_min: 2 font_size_max: 20 antialias_screen: yes show_scale: yes -cladogram_type: ext_node_sum_dep +cladogram_type: non_lined_up phylogeny_graphics_type: rectangular node_label_direction: horizontal show_default_node_shapes_internal: no @@ -191,6 +188,7 @@ list_node_data_custom_label: internal_labels_are_confidence_values: no replace_underscores_in_nh_parsing: no taxonomy_extraction_in_nh_parsing: no +# phyloXML parsing: validate_against_phyloxml_xsd_schema: true @@ -218,6 +216,7 @@ show_seq_acc: display no show_gene_names: display yes show_taxonomy_code: display yes show_taxonomy_scientific_names: display yes +show_taxonomy_rank: display no show_taxonomy_common_names: display no show_taxonomy_images: display no show_annotations: display no @@ -243,9 +242,11 @@ show_vector_data: display no # Format: 'name: display/nodisplay' click_to: display_node_data display click_to: collapse_uncollapse display +click_to: uncollapse_all display click_to: reroot display click_to: subtree display click_to: swap display +click_to: order_subtree display click_to: sort_descendants display click_to: color_subtree display click_to: change_node_font display -- 1.7.10.2