From b63bd859316b9fb8aa48a14d10f3fbc461a03f9d Mon Sep 17 00:00:00 2001
From: Sasha Sherstnev <a.sherstnev@dundee.ac.uk>
Date: Fri, 9 Aug 2013 10:15:03 +0100
Subject: [PATCH] Fix problem with unknown global constants

---
 testsrc/compbio/runner/msa/TcoffeeParametersTester.java |    5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/testsrc/compbio/runner/msa/TcoffeeParametersTester.java b/testsrc/compbio/runner/msa/TcoffeeParametersTester.java
index 4e71adc..70ba1f4 100644
--- a/testsrc/compbio/runner/msa/TcoffeeParametersTester.java
+++ b/testsrc/compbio/runner/msa/TcoffeeParametersTester.java
@@ -49,6 +49,7 @@ import compbio.metadata.RunnerConfig;
 import compbio.runner.OptionCombinator;
 import compbio.runner.msa.Tcoffee;
 import compbio.util.Util;
+
 
 public class TcoffeeParametersTester {
 
@@ -60,9 +61,9 @@ public class TcoffeeParametersTester {
 		log.setLevel(Level.INFO);
 	}
 
-	RunnerConfig<Tcoffee> tcoffeeConfig = AllTestSuit.TCOFFEE_PARAMETERS;
+	RunnerConfig<Tcoffee> tcoffeeConfig = compbio.runner.Util.getSupportedOptions(Tcoffee.class);
 	OptionCombinator tcoffeeOpc = null;
-	PresetManager<Tcoffee> presets = AllTestSuit.TCOFFEE_PRESETS;
+	PresetManager<Tcoffee> presets = compbio.runner.Util.getPresets(Tcoffee.class);
 
 	@BeforeMethod(groups = { AllTestSuit.test_group_runner,
 			AllTestSuit.test_group_non_windows })
-- 
1.7.10.2