From b67713669fda994d1e56b46fad3f8bbbceda2d91 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 26 Nov 2013 15:35:07 +0000
Subject: [PATCH] sandbox permissions

---
 examples/embedded.html         |    3 ++-
 examples/embeddedWJmol.html    |    3 ++-
 examples/formComplete.html     |    1 +
 examples/javascriptLaunch.html |    1 +
 examples/linkedapplets_ng.html |    2 ++
 5 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/examples/embedded.html b/examples/embedded.html
index 2384737..eda8a27 100644
--- a/examples/embedded.html
+++ b/examples/embedded.html
@@ -169,7 +169,8 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
 </ul>
 <applet code="jalview.bin.JalviewLite"
 			width="756" height="560" archive="jalviewApplet.jar">
-			<param name="file" value="plantfdx.fa">
+			<param name="permissions" value="sandbox">
+      <param name="file" value="plantfdx.fa">
 			<param name="annotations" value="plantfdx.annotations">
 			<param name="features" value="plantfdx.features">
 			<param name="embedded" value="true">
diff --git a/examples/embeddedWJmol.html b/examples/embeddedWJmol.html
index 5a65953..24f7406 100644
--- a/examples/embeddedWJmol.html
+++ b/examples/embeddedWJmol.html
@@ -108,7 +108,8 @@ function genHref()
   ,
   linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$",
   APPLICATION_URL : "http://www.jalview.org/services/launchApp",
-  PDBfile : "1gaq.txt FER1_MAIZE"
+  PDBfile : "1gaq.txt FER1_MAIZE",
+  permissions : "sandbox"
  };
  jmolSetCallback("hoverCallback","_jmolhover");
   jmolSetCallback("pickCallback","_jmolpick");
diff --git a/examples/formComplete.html b/examples/formComplete.html
index 91b0670..2f3f2f0 100644
--- a/examples/formComplete.html
+++ b/examples/formComplete.html
@@ -163,6 +163,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
 		<a name="api">View the full <a href="jalviewLiteJs.html">JalviewLite API documentation</a>.</a>
 		<applet code="jalview.bin.JalviewLite" width="0" height="0"
 			archive="jalviewApplet.jar" name="Jalview">
+			<param name="permissions" value="sandbox">
 			<param name="file" value="plantfdx.fa">
 			<param name="features" value="plantfdx.features">
 			<param name="wrap" value="true">
diff --git a/examples/javascriptLaunch.html b/examples/javascriptLaunch.html
index f555265..d565ed2 100644
--- a/examples/javascriptLaunch.html
+++ b/examples/javascriptLaunch.html
@@ -242,6 +242,7 @@ function startJalview(aligURL,title,alwvar) {
 archive="jalviewApplet.jar" width="0" height="0">
 <param name="debug" value="true"/>
 <param name="showbutton" value="false"/>
+<param name="permissions" value="sandbox"/>
 </applet>
 
 
diff --git a/examples/linkedapplets_ng.html b/examples/linkedapplets_ng.html
index 86f4bc0..ef43184 100644
--- a/examples/linkedapplets_ng.html
+++ b/examples/linkedapplets_ng.html
@@ -208,6 +208,7 @@ document.onclick = mclose;
  
     ,
     linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$",
+    permissions : 'sandbox',
     APPLICATION_URL : "http://www.jalview.org/services/launchApp"
   };
  
@@ -242,6 +243,7 @@ document.onclick = mclose;
  
     ,
     linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$",
+    permissions : 'sandbox',
     APPLICATION_URL : "http://www.jalview.org/services/launchApp"
   };
   deployJava.runApplet(attributes, parameters, '1.6');
-- 
1.7.10.2