From b69d271a9c1b122869742832b09675de2dc7c84a Mon Sep 17 00:00:00 2001 From: jprocter Date: Mon, 3 Oct 2011 14:14:10 +0100 Subject: [PATCH] removed unnecessary parameters and changed alignment upload to use file upload parameter (JAL-949) --- src/jalview/ws/rest/RestClient.java | 21 +++++++++++---------- 1 file changed, 11 insertions(+), 10 deletions(-) diff --git a/src/jalview/ws/rest/RestClient.java b/src/jalview/ws/rest/RestClient.java index f42c0c4..95de391 100644 --- a/src/jalview/ws/rest/RestClient.java +++ b/src/jalview/ws/rest/RestClient.java @@ -309,18 +309,19 @@ public class RestClient extends WSClient implements WSClientI, jalview.ws.rest.params.JobConstant toolp; //toolp = new jalview.ws.rest.JobConstant("tool","jalview"); //iparams.put(toolp.token, toolp); - toolp = new jalview.ws.rest.params.JobConstant("mbjob[method]","shmr"); - iparams.put(toolp.token, toolp); - toolp = new jalview.ws.rest.params.JobConstant("mbjob[description]","step 1"); - iparams.put(toolp.token, toolp); - toolp = new jalview.ws.rest.params.JobConstant("start_search","1"); - iparams.put(toolp.token, toolp); - toolp = new jalview.ws.rest.params.JobConstant("blast","0"); - iparams.put(toolp.token, toolp); + //toolp = new jalview.ws.rest.params.JobConstant("mbjob[method]","shmr"); + //iparams.put(toolp.token, toolp); + //toolp = new jalview.ws.rest.params.JobConstant("mbjob[description]","step 1"); + //iparams.put(toolp.token, toolp); + //toolp = new jalview.ws.rest.params.JobConstant("start_search","1"); + //iparams.put(toolp.token, toolp); + //toolp = new jalview.ws.rest.params.JobConstant("blast","0"); + //iparams.put(toolp.token, toolp); jalview.ws.rest.params.Alignment aliinput = new jalview.ws.rest.params.Alignment(); - aliinput.token = "ali";//_file"; - aliinput.writeAsFile=false;//true; + // SHMR server has a 65K limit for content pasted into the 'ali' parameter, so we always upload our files. + aliinput.token = "ali_file";//_file"; + aliinput.writeAsFile=true;//true; //aliinput.token = "ali_file"; //aliinput.writeAsFile=true; iparams.put(aliinput.token, aliinput); -- 1.7.10.2