From b8b5c2410e8814caf24d216545f2266c8854f963 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 18 Jul 2006 15:30:08 +0000
Subject: [PATCH] Takes a string, not sequence

---
 src/jalview/datamodel/BinarySequence.java |   26 ++------------------------
 1 file changed, 2 insertions(+), 24 deletions(-)

diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java
index 89d3971..7d03404 100755
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -38,22 +38,9 @@ public class BinarySequence extends Sequence
      *
      * @param s DOCUMENT ME!
      */
-    public BinarySequence(SequenceI s)
+    public BinarySequence(String s)
     {
-        super(s.getName(), s.getSequence(), s.getStart(), s.getEnd());
-    }
-
-    /**
-     * Creates a new BinarySequence object.
-     *
-     * @param name DOCUMENT ME!
-     * @param sequence DOCUMENT ME!
-     * @param start DOCUMENT ME!
-     * @param end DOCUMENT ME!
-     */
-    public BinarySequence(String name, String sequence, int start, int end)
-    {
-        super(name, sequence, start, end);
+        super("", s, 0, s.length());
     }
 
     /**
@@ -168,13 +155,4 @@ public class BinarySequence extends Sequence
         return dbinary;
     }
 
-    /**
-     * DOCUMENT ME!
-     *
-     * @param rt DOCUMENT ME!
-     */
-    public static void printMemory(Runtime rt)
-    {
-        System.out.println("DEBUG: Free memory = " + rt.freeMemory()); // log.
-    }
 }
-- 
1.7.10.2