From ba947355e5c575d800d4ea43dd5af7aac10125a6 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Mon, 26 Sep 2016 11:40:57 +0100 Subject: [PATCH] JAL-1950 avoid NPE when archScore is null --- src/jalview/ws/ebi/HmmerJSONProcessor.java | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/jalview/ws/ebi/HmmerJSONProcessor.java b/src/jalview/ws/ebi/HmmerJSONProcessor.java index a3eecd3..428c498 100644 --- a/src/jalview/ws/ebi/HmmerJSONProcessor.java +++ b/src/jalview/ws/ebi/HmmerJSONProcessor.java @@ -181,7 +181,9 @@ public class HmmerJSONProcessor hitseq.addSequenceFeature(new SequenceFeature( "Pfam Domain Architecture", (hmmrhit.get("archindex")) + " " + (arch = (String) hmmrhit.get("arch")), 0, - 0, Integer.valueOf((String) hmmrhit.get("archScore")), + 0, + (hmmrhit.get("archScore") != null ? Integer + .valueOf((String) hmmrhit.get("archScore")) : 0f), "HMMER3")); addArchGroup(hitseq, arch); alipp.setScore(Double.valueOf("" + dhit.get("bitscore"))); -- 1.7.10.2