From bc9b9a3dc799adc3d14ef23115074c8871d2746d Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Tue, 26 Aug 2008 10:09:55 +0000
Subject: [PATCH] uses shared singleton from jalview.gui.SequenceFetcher
 (consider revising so an instance of
 jalview.ws.SequenceFetcher is passed to constructor)

---
 src/jalview/ws/DBRefFetcher.java |    7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/jalview/ws/DBRefFetcher.java b/src/jalview/ws/DBRefFetcher.java
index b007e13..82b411a 100644
--- a/src/jalview/ws/DBRefFetcher.java
+++ b/src/jalview/ws/DBRefFetcher.java
@@ -31,7 +31,9 @@ import jalview.ws.dbsources.Uniprot;
 import jalview.ws.ebi.EBIFetchClient;
 
 /**
- * DOCUMENT ME!
+ * Implements a runnable for validating a sequence 
+ * against external databases and then propagating 
+ * references and features onto the sequence(s)
  * 
  * @author $author$
  * @version $Revision$
@@ -80,7 +82,8 @@ public class DBRefFetcher implements Runnable
         ds[i] = seqs[i];
     }
     this.dataset = ds;
-    sfetcher = new SequenceFetcher();
+    // TODO Jalview 2.5 lots of this code should be in the gui package!
+    sfetcher = jalview.gui.SequenceFetcher.getSequenceFetcherSingleton(af); 
     // select appropriate databases based on alignFrame context.
     if (af.getViewport().getAlignment().isNucleotide())
     {
-- 
1.7.10.2