From bcb00c5d25c6c0783a5057ab23a267d81cc1e353 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 1 May 2007 13:58:22 +0000
Subject: [PATCH] set chains available

---
 src/MCview/AppletPDBCanvas.java |    3 ++-
 src/MCview/AppletPDBViewer.java |    3 ++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/src/MCview/AppletPDBCanvas.java b/src/MCview/AppletPDBCanvas.java
index 47aa94b..bfcd67a 100755
--- a/src/MCview/AppletPDBCanvas.java
+++ b/src/MCview/AppletPDBCanvas.java
@@ -83,6 +83,7 @@ public class AppletPDBCanvas
 
   public AppletPDBCanvas(PDBEntry pdbentry,
                          SequenceI[] seq,
+                         String [] chains,
                          AlignmentPanel ap,
                          String protocol)
 
@@ -94,7 +95,7 @@ public class AppletPDBCanvas
     ssm = StructureSelectionManager.getStructureSelectionManager();
 
     try{
-      pdb = ssm.setMapping(seq, pdbentry.getFile(), protocol);
+      pdb = ssm.setMapping(seq, chains, pdbentry.getFile(), protocol);
 
       if(protocol.equals(jalview.io.AppletFormatAdapter.PASTE))
        pdbentry.setFile("INLINE"+pdb.id);
diff --git a/src/MCview/AppletPDBViewer.java b/src/MCview/AppletPDBViewer.java
index 2f8a90f..2471f32 100755
--- a/src/MCview/AppletPDBViewer.java
+++ b/src/MCview/AppletPDBViewer.java
@@ -33,6 +33,7 @@ public class AppletPDBViewer
 
   public AppletPDBViewer(PDBEntry pdbentry,
                          SequenceI[] seq,
+                         String [] chains,
                          AlignmentPanel ap,
                          String protocol)
   {
@@ -45,7 +46,7 @@ public class AppletPDBViewer
       ex.printStackTrace();
     }
 
-    pdbcanvas = new AppletPDBCanvas(pdbentry, seq, ap, protocol);
+    pdbcanvas = new AppletPDBCanvas(pdbentry, seq, chains, ap, protocol);
 
 
     add(pdbcanvas, BorderLayout.CENTER);
-- 
1.7.10.2