From bdb9169fe2d203d921a111dc683d7daf7b887c25 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 23 Apr 2007 12:47:53 +0000
Subject: [PATCH] getColour method added

---
 src/MCview/AppletPDBCanvas.java       |   10 ++++++++++
 src/jalview/appletgui/AppletJmol.java |    8 ++++++++
 2 files changed, 18 insertions(+)

diff --git a/src/MCview/AppletPDBCanvas.java b/src/MCview/AppletPDBCanvas.java
index 0c7320d..c3ad10e 100755
--- a/src/MCview/AppletPDBCanvas.java
+++ b/src/MCview/AppletPDBCanvas.java
@@ -1144,6 +1144,16 @@ public class AppletPDBCanvas
     repaint();
   }
 
+
+  public Color getColour(int atomIndex, int pdbResNum, String chain, String pdbfile)
+  {
+    return Color.white;
+   // if (!pdbfile.equals(pdbentry.getFile()))
+   //   return null;
+
+    //return new Color(viewer.getAtomArgb(atomIndex));
+  }
+
   public void updateColours(Object source)
   {
     AlignmentPanel ap = (AlignmentPanel) source;
diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java
index b7e67c1..3f3c3dd 100644
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -461,6 +461,14 @@ public class AppletJmol extends Frame
 //End StructureListener
 ////////////////////////////
 
+  public Color getColour(int atomIndex, int pdbResNum, String chain, String pdbfile)
+  {
+    if (!pdbfile.equals(pdbentry.getFile()))
+      return null;
+
+    return new Color(viewer.getAtomArgb(atomIndex));
+  }
+
   FeatureRenderer fr;
   public void colourBySequence(AlignmentPanel ap)
   {
-- 
1.7.10.2