From be1666f6c9be6b18051b233abdde85962ac0c89a Mon Sep 17 00:00:00 2001 From: tcofoegbu Date: Wed, 22 Jun 2016 17:02:53 +0100 Subject: [PATCH] JAL-1996 added link for viewing example source codes, changed release history outline from list to table --- examples/appletDeployment.html | 113 +++++++++++++++++++++++++--------------- examples/applets.html | 3 +- examples/embedded.html | 1 + examples/formComplete.html | 2 +- examples/javascriptLaunch.html | 2 +- examples/linkedapplets_ng.html | 2 +- 6 files changed, 76 insertions(+), 47 deletions(-) diff --git a/examples/appletDeployment.html b/examples/appletDeployment.html index 0301225..7fcca00 100644 --- a/examples/appletDeployment.html +++ b/examples/appletDeployment.html @@ -46,7 +46,7 @@ -

The snippet below shows a mininmal code for embeding Jalview applet into a web page. +

To run Jalview applet in your web page download the Jars listed above. The snippet below shows a minimal code for embedding Jalview applet into a web page. 


 <applet code="jalview.bin.JalviewLite" width="756" height="560" archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar">
 	<param name="permissions" value="sandbox" />
@@ -63,26 +63,38 @@
 </applet>
-For more information and advanced options, see the applet parameters page, and other documentation in the links to the left. - - -

**NEW FEATURES** in Jalview 2.9

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Applet Release History
ReleaseNew Features / required changes
2.9
(Latest)
  • Split Views for cDNA and Protein alignments
    Specify second alignment with 'file2' parameter, and set cDNA/Protein column scaling with scaleProteinAsCdna
    • @@ -95,9 +107,11 @@ For more information and advanced options, see the java-json.jar,json_simple-1.1.jar"
-

-

**NEW FEATURES** in Jalview 2.8

-
    +
2.8
  • Normalised sequence logo display
  • RNA secondary structure annotation row @@ -112,9 +126,11 @@ For more information and advanced options, see the mayscript' attribute - either as a parameter (<param name="mayscript" value="true"/;gt;) or as a bare attribute in the applet html tag).
@@ -127,13 +143,17 @@ For more information and advanced options, see the download the Jmol applet from here
  • Minimum recommended version of Java runtime for the applet is now 1.5 (JalviewLite v2.6 without the Jmol viewer may work ok on earlier Java environments but compatibility can no-longer be guaranteed).
    • - -
    **NEW FEATURES** in Jalview 2.5

    -
      -
    • New parameters to control display of tree annotation, width of alignment columns, and to disable the jalview button and check for Jmol on startup.
      • -
    -
    **NEW FEATURES** in Jalview 2.4

    -
      +
    2.5
      +
    • New parameters to control display of tree annotation, width of alignment columns, and to disable the jalview button and check for Jmol on startup.
    +
    2.4 - **NEW FEATURES** in Jalview 2.1 -
      + +
    2.1 + View the source code for this example here

    diff --git a/examples/formComplete.html b/examples/formComplete.html index dc651fb..97d28ea 100644 --- a/examples/formComplete.html +++ b/examples/formComplete.html @@ -33,7 +33,7 @@

    Using the Javascript API to fill out forms using data from JalviewLite
    Click the Javascript buttons below to interact with the Applet instance on the page.

    -View the source in your browser to see how it has been done.
    + View the source here to see how it has been done
    View the full JalviewLite API documentation. diff --git a/examples/javascriptLaunch.html b/examples/javascriptLaunch.html index 47f60e8..8d1b1a6 100644 --- a/examples/javascriptLaunch.html +++ b/examples/javascriptLaunch.html @@ -115,7 +115,7 @@ archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_ -

    Javascript Launch Button

    The button below demonstrates how JalviewLite can be launched via a javascript action.

    +

    Javascript Launch Button

    The button below demonstrates how JalviewLite can be launched via a javascript action. View the source here to see how it has been done

    diff --git a/examples/linkedapplets_ng.html b/examples/linkedapplets_ng.html index 4df08fc..c6b9ed2 100644 --- a/examples/linkedapplets_ng.html +++ b/examples/linkedapplets_ng.html @@ -34,7 +34,7 @@

    JalviewLite Linked Applets Demo

    The two applets below use JalviewLite's javascript API to exchange events about the currently selected region and mouse position in the alignment. -

    + View the source here to see how it has been done