From be1c66c1c236e2cbc982d03ef690996d4b3dd35a Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 26 Sep 2013 21:37:04 +0000 Subject: [PATCH] inprogress --- forester/java/src/org/forester/application/decoratorX.java | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/forester/java/src/org/forester/application/decoratorX.java b/forester/java/src/org/forester/application/decoratorX.java index 677d9ed..a65f048 100644 --- a/forester/java/src/org/forester/application/decoratorX.java +++ b/forester/java/src/org/forester/application/decoratorX.java @@ -2,7 +2,7 @@ // ~/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester/java/forester.jar // org.forester.application.decoratorX // RRMa_ALL_plus_RRMa_ee3_50_hmmalign_05_40_fme_with_seqs_2.phylo.xml -// nature12311-s3_cz_4.txt x +// nature12311-s3_cz_4.txt x1 x2 package org.forester.application; @@ -51,7 +51,6 @@ public class decoratorX { final PhyloXmlParser xml_parser = new PhyloXmlParser(); final Phylogeny phy = factory.create( intree, xml_parser )[ 0 ]; final BasicTable t = BasicTableParser.parse( intable, '\t' ); - // System.out.println( t.toString() ); final PhylogenyNodeIterator it = phy.iteratorExternalForward(); int i = 0; while ( it.hasNext() ) { @@ -102,9 +101,6 @@ public class decoratorX { System.out.println( node + "->" + annotation ); } } - // if ( !found ) { - // throw new Exception( "Sequence from node " + node + " not found: " + node_seq ); - // } } private static void processNode2( final PhylogenyNode node, final Phylogeny t ) { -- 1.7.10.2