From beca055dbed389362bb692de3c15fa5487c1ebd3 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 13 Nov 2006 16:11:09 +0000
Subject: [PATCH] Fasta files with * read not identified as BLC

---
 src/jalview/io/IdentifyFile.java |    8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 9a248e5..024da61 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -122,10 +122,16 @@ public class IdentifyFile
                     // could be BLC file, read next line to confirm
                     data = reader.readLine();
 
-                    if (data.indexOf(">") > -1 || data.indexOf("*") >-1 )
+                    if (data.indexOf(">") > -1)
                     {
                         reply = "BLC";
                     }
+                    //Is this a single line BLC file?
+                    data = reader.readLine();
+                    if(data!=null && data.length()==1)
+                    {
+                      reply = "BLC";
+                    }
                     else
                     {
                         reply = "FASTA";
-- 
1.7.10.2