From bf4d22102e92dc26cc62c532df539771bfd829a7 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Feb 2006 15:17:55 +0000
Subject: [PATCH] Graphline is a single line

---
 src/jalview/appletgui/AnnotationPanel.java |   18 ++++++------------
 1 file changed, 6 insertions(+), 12 deletions(-)

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index bcc2866..0fdeed6 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -579,14 +579,11 @@ public class AnnotationPanel
     g.drawLine(x-av.charWidth,y2,(eRes-sRes+1)*av.charWidth,y2);
 
 
-    if(aa.graphLines!=null)
+    if(aa.threshold!=null)
     {
-      for(int l=0; l<aa.graphLines.size(); l++)
-      {
-        g.setColor(aa.getGraphLine(l).colour);
-        y2 = (int)(y - ((aa.getGraphLine(l).value-min) / range)*graphHeight);
+        g.setColor(aa.threshold.colour);
+        y2 = (int)(y - ((aa.threshold.value-min) / range)*graphHeight);
         g.drawLine(x-av.charWidth,y2,(eRes-sRes+1)*av.charWidth,y2);
-      }
     }
 
     eRes = Math.min(eRes, aa.annotations.length);
@@ -617,14 +614,11 @@ public class AnnotationPanel
 
     float range = max - min;
 
-    if(aa.graphLines!=null)
+    if(aa.threshold!=null)
     {
-      for(int l=0; l<aa.graphLines.size(); l++)
-      {
-        g.setColor(aa.getGraphLine(l).colour);
-        y2 = (int)(y - ((aa.getGraphLine(l).value-min) / range)*aa.graphHeight);
+        g.setColor(aa.threshold.colour);
+        y2 = (int)(y - ((aa.threshold.value-min) / range)*aa.graphHeight);
         g.drawLine(x-av.charWidth,y2,(eRes-sRes+1)*av.charWidth,y2);
-       }
     }
 
     y1 = y2 = y;
-- 
1.7.10.2