From bfb23ab859daed1e0abd6840c1399b23ca852770 Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Tue, 8 Mar 2005 18:12:13 +0000 Subject: [PATCH] add lower case residue props --- src/jalview/schemes/ResidueProperties.java | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java index 0a2c43e..95acf91 100755 --- a/src/jalview/schemes/ResidueProperties.java +++ b/src/jalview/schemes/ResidueProperties.java @@ -54,6 +54,29 @@ public class ResidueProperties { aaHash.put("B", new Integer(20)); aaHash.put("Z", new Integer(21)); aaHash.put("X", new Integer(22)); + aaHash.put("a", new Integer(0)); + aaHash.put("r", new Integer(1)); + aaHash.put("n", new Integer(2)); + aaHash.put("d", new Integer(3)); + aaHash.put("c", new Integer(4)); + aaHash.put("q", new Integer(5)); + aaHash.put("e", new Integer(6)); + aaHash.put("g", new Integer(7)); + aaHash.put("h", new Integer(8)); + aaHash.put("i", new Integer(9)); + aaHash.put("l", new Integer(10)); + aaHash.put("k", new Integer(11)); + aaHash.put("m", new Integer(12)); + aaHash.put("f", new Integer(13)); + aaHash.put("p", new Integer(14)); + aaHash.put("s", new Integer(15)); + aaHash.put("t", new Integer(16)); + aaHash.put("w", new Integer(17)); + aaHash.put("y", new Integer(18)); + aaHash.put("v", new Integer(19)); + aaHash.put("b", new Integer(20)); + aaHash.put("z", new Integer(21)); + aaHash.put("x", new Integer(22)); aaHash.put("-", new Integer(23)); aaHash.put("*", new Integer(23)); aaHash.put(".", new Integer(23)); -- 1.7.10.2