From bfc94c88eba9f1f317b44c1316d625697cc441a6 Mon Sep 17 00:00:00 2001 From: cmzmasek Date: Tue, 14 Feb 2017 12:29:48 -0800 Subject: [PATCH] in progress --- forester/java/src/org/forester/archaeopteryx/AptxUtil.java | 1 - .../java/src/org/forester/archaeopteryx/MainFrameApplication.java | 1 - forester/java/src/org/forester/archaeopteryx/NodePanel.java | 1 - forester/java/src/org/forester/archaeopteryx/TreePanel.java | 4 ---- .../src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java | 2 -- 5 files changed, 9 deletions(-) diff --git a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java index d6824e9..c0d0e12 100644 --- a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java +++ b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java @@ -62,7 +62,6 @@ import javax.imageio.stream.ImageOutputStream; import javax.swing.JOptionPane; import javax.swing.text.MaskFormatter; -import org.forester.archaeopteryx.Options.PHYLOGENY_DISPLAY_TYPE; import org.forester.io.parsers.PhylogenyParser; import org.forester.io.parsers.nexus.NexusPhylogeniesParser; import org.forester.io.parsers.nhx.NHXParser; diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java b/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java index e44430c..9488a1c 100644 --- a/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java +++ b/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java @@ -77,7 +77,6 @@ import org.forester.io.parsers.nhx.NHXParser; import org.forester.io.parsers.nhx.NHXParser.TAXONOMY_EXTRACTION; import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException; import org.forester.io.parsers.phyloxml.PhyloXmlParser; -import org.forester.io.parsers.phyloxml.PhyloXmlUtil; import org.forester.io.parsers.tol.TolParser; import org.forester.io.parsers.util.ParserUtils; import org.forester.io.writers.SequenceWriter; diff --git a/forester/java/src/org/forester/archaeopteryx/NodePanel.java b/forester/java/src/org/forester/archaeopteryx/NodePanel.java index b3df423..ed7ed0b 100644 --- a/forester/java/src/org/forester/archaeopteryx/NodePanel.java +++ b/forester/java/src/org/forester/archaeopteryx/NodePanel.java @@ -32,7 +32,6 @@ import java.awt.event.ActionEvent; import java.awt.event.ActionListener; import java.util.List; import java.util.Map; -import java.util.SortedMap; import java.util.SortedSet; import javax.swing.BoxLayout; diff --git a/forester/java/src/org/forester/archaeopteryx/TreePanel.java b/forester/java/src/org/forester/archaeopteryx/TreePanel.java index 0b07a70..6af9218 100644 --- a/forester/java/src/org/forester/archaeopteryx/TreePanel.java +++ b/forester/java/src/org/forester/archaeopteryx/TreePanel.java @@ -99,7 +99,6 @@ import org.forester.archaeopteryx.ControlPanel.NodeClickAction; import org.forester.archaeopteryx.Options.CLADOGRAM_TYPE; import org.forester.archaeopteryx.Options.NODE_LABEL_DIRECTION; import org.forester.archaeopteryx.Options.PHYLOGENY_GRAPHICS_TYPE; -import org.forester.archaeopteryx.Options.PHYLOGENY_DISPLAY_TYPE; import org.forester.archaeopteryx.phylogeny.data.RenderableDomainArchitecture; import org.forester.archaeopteryx.phylogeny.data.RenderableMsaSequence; import org.forester.archaeopteryx.phylogeny.data.RenderableVector; @@ -122,8 +121,6 @@ import org.forester.phylogeny.data.NodeVisualData; import org.forester.phylogeny.data.NodeVisualData.NodeFill; import org.forester.phylogeny.data.NodeVisualData.NodeShape; import org.forester.phylogeny.data.PhylogenyDataUtil; -import org.forester.phylogeny.data.PropertiesList; -import org.forester.phylogeny.data.Property; import org.forester.phylogeny.data.ProteinDomain; import org.forester.phylogeny.data.Sequence; import org.forester.phylogeny.data.SequenceRelation; @@ -131,7 +128,6 @@ import org.forester.phylogeny.data.Taxonomy; import org.forester.phylogeny.data.Uri; import org.forester.phylogeny.iterators.PhylogenyNodeIterator; import org.forester.phylogeny.iterators.PreorderTreeIterator; -import org.forester.util.BasicDescriptiveStatistics; import org.forester.util.DescriptiveStatistics; import org.forester.util.ForesterConstants; import org.forester.util.ForesterUtil; diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java index d226801..f55028f 100644 --- a/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java +++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java @@ -25,8 +25,6 @@ package org.forester.io.parsers.phyloxml.data; -import java.util.Arrays; - import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException; import org.forester.io.parsers.phyloxml.PhyloXmlMapping; import org.forester.io.parsers.phyloxml.XmlElement; -- 1.7.10.2