From c248aad32a357e7440b2e5ab3ea8c5fddbb26b84 Mon Sep 17 00:00:00 2001 From: tcofoegbu Date: Wed, 15 Jul 2015 14:25:15 +0100 Subject: [PATCH] JAL-1667 JAL-1668 updated reviewed and updated docs --- help/html/features/pdbsequencefetcher.html | 29 ++++++++++++++-------------- help/html/features/structurechooser.html | 2 +- 2 files changed, 16 insertions(+), 15 deletions(-) diff --git a/help/html/features/pdbsequencefetcher.html b/help/html/features/pdbsequencefetcher.html index 15dc2c6..990a1c9 100644 --- a/help/html/features/pdbsequencefetcher.html +++ b/help/html/features/pdbsequencefetcher.html @@ -25,12 +25,12 @@ PDB Sequence Fetcher -

From Jalview 2.x.x a speciliased interface was introduced for +

From Jalview 2.9 a specialised interface was introduced for fast and efficient discovery/retrieval of sequence data from the PDB database. The introduced interface enables live querying of PDB data on-the-fly thereby eliminating the need to memorise database accession - or to cross-reference other bioinformatics websites before retrieving - a sequence data in jalview. The underlying technology is provided by + or to manually cross-reference other bioinformatics websites before retrieving + sequence data in Jalview. The underlying technology is provided by EBI and is based on Apache Solr which is a text based search engine.

The PDB Sequence Fetcher interface can be opened by selecting PDB @@ -40,17 +40,18 @@

PDB sequence fetcher (introduced in Jalview 2.x.x) + alt="PDB sequence fetcher (introduced in Jalview 2.9)">

- Searching the PDB Database -
Once the interface is opened, typing in the search text box - will execute a live query to the PDB database and display the results - on-the-fly as seen in the screen-shot above. Use the drop-down menu to - select a specific field to search by in the PDB database, the default - option is - 'ALL'. Furthermore, the PDB search interface also - provides the following functionalities: +

Searching the PDB Database

+

When the interface is opened, a live query to the PDB database is + executed every time a character is typed into the search text box, and + a result is displayed on-the-fly as seen in the screenshot above.

+ +

Use the drop-down menu to select a specific field to search by in the PDB database, the default + option is 'ALL'.

+ +

Furthermore, the PDB search interface also provides the following functionalities:

- The Structure Chooser interface was introduced in Jalview 2.x.x. + The Structure Chooser interface was introduced in Jalview 2.9.

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