From c43a1ee36b2679fd972599186e4d6e45fda87623 Mon Sep 17 00:00:00 2001 From: jprocter Date: Fri, 11 Jun 2010 14:39:04 +0000 Subject: [PATCH] jalview 2.5.1 release notes --- help/html/releases.html | 58 +++++++++++++++++++++++++++++++++++++++++++++++ help/html/whatsNew.html | 3 +++ 2 files changed, 61 insertions(+) diff --git a/help/html/releases.html b/help/html/releases.html index 4c2d98c..3599194 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -34,6 +34,64 @@ + +

2.5.1
+ 14/6/2010

+ + + +

Alignment prettyprinter doesn't cope with long sequence IDs +
clustalx colourscheme colours Ds preferentially when both + D+E are present in over 50% of the column
nucleic acid structures retrieved from PDB do not import + correctly
More columns get selected than were clicked on when a number + of columns are hidden
annotation label popup menu not providing correct + add/hide/show options when rows are hidden or none are present

+ Applet +

annotation panel disappears when annotation is + hidden/removed

+ Application +

Alignment view not redrawn properly when new alignment + opened where annotation panel is visible but no annotations are + present on alignment
pasted region containing hidden columns is incorrectly + displayed in new alignment window
Jalview slow to complete operations when stdout is flooded + (fix is to close the Jalview console)
CSV output of consensus only includes the percentage of all + symbols if sequence logo display is enabled
typo in AlignmentFrame->View->Hide->all but + selected Rregions menu item.
inconsistent group submenu and Format submenu entry 'Un' or + 'Non'conserved
Sequence feature settings are being shared by multiple + distinct alignments
group annotation not recreated when tree partition is + changed
double click on group annotation to select sequences does + not propagate to associated trees
Mac OSX specific issues: +
- exception raised when mouse clicked on desktop window + background
- Desktop menu placed on menu bar and application name set + correctly
- sequence feature settings not wide enough for the save + feature colourscheme button
+

+ + +

2.5
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 4723a9a..e6ab695 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -21,6 +21,9 @@

What's new ?

Jalview 2.5.1 is a bug fix release for the 2.5 version of +Jalview. See the release +history for the bugs that this release resolves.

Highlights in Jalview Version 2.5