From c49683bef626d9c1de9d06e5f11039e6d4df55c3 Mon Sep 17 00:00:00 2001
From: Mateusz Warowny <mmzwarowny@dundee.ac.uk>
Date: Wed, 18 Oct 2023 14:02:01 +0200
Subject: [PATCH] JAL-1601 Rename task class to SecStructPredMsaTask

---
 src/jalview/ws2/actions/secstructpred/SecStructPredAction.java   |    4 ++--
 .../{SecStructPredTask.java => SecStructPredMsaTask.java}        |    6 +++---
 .../jalview/ws2/actions/secstructpred/SecStructPredTaskTest.java |    2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)
 rename src/jalview/ws2/actions/secstructpred/{SecStructPredTask.java => SecStructPredMsaTask.java} (96%)

diff --git a/src/jalview/ws2/actions/secstructpred/SecStructPredAction.java b/src/jalview/ws2/actions/secstructpred/SecStructPredAction.java
index a74965e..f625f79 100644
--- a/src/jalview/ws2/actions/secstructpred/SecStructPredAction.java
+++ b/src/jalview/ws2/actions/secstructpred/SecStructPredAction.java
@@ -44,10 +44,10 @@ public class SecStructPredAction extends BaseAction<AlignmentI>
     client = builder.client;
   }
   
-  public SecStructPredTask createTask(AlignViewportI viewport,
+  public SecStructPredMsaTask createTask(AlignViewportI viewport,
       List<ArgumentI> args, Credentials credentials)
   {
-    return new SecStructPredTask(client, args, credentials, viewport);
+    return new SecStructPredMsaTask(client, args, credentials, viewport);
   }
 
   @Override
diff --git a/src/jalview/ws2/actions/secstructpred/SecStructPredTask.java b/src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java
similarity index 96%
rename from src/jalview/ws2/actions/secstructpred/SecStructPredTask.java
rename to src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java
index fb904a8..5067ff7 100644
--- a/src/jalview/ws2/actions/secstructpred/SecStructPredTask.java
+++ b/src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java
@@ -28,8 +28,8 @@ import jalview.ws2.api.Credentials;
 import jalview.ws2.api.JobStatus;
 import jalview.ws2.client.api.SecStructPredWebServiceClientI;
 
-public class SecStructPredTask
-        extends BaseTask<SecStructPredTask.SecStructPredJob, AlignmentI>
+public class SecStructPredMsaTask
+        extends BaseTask<SecStructPredMsaTask.SecStructPredJob, AlignmentI>
 {
   private final SecStructPredWebServiceClientI client;
 
@@ -39,7 +39,7 @@ public class SecStructPredTask
 
   private final char gapChar;
 
-  SecStructPredTask(SecStructPredWebServiceClientI client,
+  SecStructPredMsaTask(SecStructPredWebServiceClientI client,
           List<ArgumentI> args, Credentials credentials,
           AlignViewportI viewport)
   {
diff --git a/test/jalview/ws2/actions/secstructpred/SecStructPredTaskTest.java b/test/jalview/ws2/actions/secstructpred/SecStructPredTaskTest.java
index f46fae2..3a79cd4 100644
--- a/test/jalview/ws2/actions/secstructpred/SecStructPredTaskTest.java
+++ b/test/jalview/ws2/actions/secstructpred/SecStructPredTaskTest.java
@@ -107,7 +107,7 @@ public class SecStructPredTaskTest
   public void testPrepareJobs_checkInputSequences(AlignViewport viewport,
       List<String> expectedInput) throws Exception
   {
-    var task = new SecStructPredTask(mockClient, List.of(), Credentials.empty(),
+    var task = new SecStructPredMsaTask(mockClient, List.of(), Credentials.empty(),
         viewport);
     var jobs = task.prepareJobs();
     List<Matcher<? super SequenceI>> seqMatchers = new ArrayList<>(
-- 
1.7.10.2