From c4a6ea203965c7ad3ede7dd16529b3b50d5aead4 Mon Sep 17 00:00:00 2001
From: kjvdheide <kjvanderheide@dundee.ac.uk>
Date: Sat, 6 Jan 2018 22:36:39 +0000
Subject: [PATCH] JAL-281 first line also checked for PhyloXML identification

---
 src/jalview/io/IdentifyFile.java |    3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index a4d6e8b..854a46e 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -342,7 +342,8 @@ public class IdentifyFile
         }
         else // phylogenetic file?
         {
-          if (source.nextLine().startsWith("<phyloxml"))
+          if (data.startsWith("<phyloxml")
+                  || source.nextLine().startsWith("<phyloxml"))
           {
             reply = FileFormat.PhyloXML;
             break;
-- 
1.7.10.2