From c560f35750c96eb1ee4e0e18adf581788ac00ad5 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Tue, 4 Nov 2008 15:56:26 +0000
Subject: [PATCH] fix for recovery of dna/protein sequence mappings in jar
 file (mantis bug id 40124)

---
 src/jalview/gui/Jalview2XML.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index f54383e..88bb5f2 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -616,7 +616,7 @@ public class Jalview2XML
           for (int m = 0; m < pmaps.length; m++)
           {
             AlcodMap alcmap = new AlcodMap();
-            alcmap.setDnasq("" + dnas[m].hashCode());
+            alcmap.setDnasq("" + seqHash(dnas[m]));
             alcmap.setMapping(createVamsasMapping(pmaps[m], dnas[m], null,
                     false));
             alc.addAlcodMap(alcmap);
-- 
1.7.10.2