From c5615cdc7fff013651b1fae48f7daae97f2b2c25 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Wed, 24 Aug 2016 17:29:27 +0100 Subject: [PATCH] JAL-2106 javadoc for sifts mapping method --- src/jalview/structure/StructureSelectionManager.java | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java index 04afab6..182a48f 100644 --- a/src/jalview/structure/StructureSelectionManager.java +++ b/src/jalview/structure/StructureSelectionManager.java @@ -585,6 +585,20 @@ public class StructureSelectionManager return "cif".equalsIgnoreCase(fileExt); } + /** + * retrieve a mapping for seq from SIFTs using associated DBRefEntry for + * uniprot or PDB + * + * @param seq + * @param pdbFile + * @param targetChainId + * @param pdb + * @param maxChain + * @param sqmpping + * @param maxAlignseq + * @return + * @throws SiftsException + */ private StructureMapping getStructureMapping(SequenceI seq, String pdbFile, String targetChainId, StructureFile pdb, PDBChain maxChain, jalview.datamodel.Mapping sqmpping, -- 1.7.10.2