From c5ab23290f8f52cf0f3446283297ce2e087cd902 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Fri, 8 Jun 2012 14:24:24 +0000 Subject: [PATCH] Created wiki page through web user interface. --- wiki/GSDI.wiki | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 wiki/GSDI.wiki diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki new file mode 100644 index 0000000..a875f25 --- /dev/null +++ b/wiki/GSDI.wiki @@ -0,0 +1,27 @@ +#summary preprocessing of gene trees for speciation/duplication inference + += Generalized Speciation Duplication Inference + +== Purpose == + +Infer duplication events on a gene tree given a trusted species tree. + +== Usage == +{{{ +java -Xmx1024m -cp +path/to/forester.jar org.forester.application.gene_tree_preprocess +}}} + + + +== Details == + +Output consists of three files: + * input-name_preprocessed_gene_tree.phylo.xml + * input-name_species_present.txt + * input-name_removed_nodes.txt + + +== Download == + +Download forester.jar here: http://code.google.com/p/forester/downloads/list \ No newline at end of file -- 1.7.10.2