From c84d2601499c7d332cfd208f589686af8e3b1a20 Mon Sep 17 00:00:00 2001
From: James Procter <j.procter@dundee.ac.uk>
Date: Tue, 24 Jan 2023 07:46:34 +0000
Subject: [PATCH] JAL-629 labelled breaks are frowned upon by everyone

---
 src/jalview/bin/ArgParser.java |   12 ++++++------
 src/jalview/bin/Commands.java  |   12 ++++++------
 2 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/src/jalview/bin/ArgParser.java b/src/jalview/bin/ArgParser.java
index 4cdfd19..4d37847 100644
--- a/src/jalview/bin/ArgParser.java
+++ b/src/jalview/bin/ArgParser.java
@@ -454,7 +454,7 @@ public class ArgParser
 
     // new style
     Enumeration<String> argE = Collections.enumeration(Arrays.asList(args));
-    ARG: while (argE.hasMoreElements())
+    while (argE.hasMoreElements())
     {
       String arg = argE.nextElement();
       String argName = null;
@@ -497,14 +497,14 @@ public class ArgParser
         {
           // arg not found
           Console.error("Argument '" + arg + "' not recognised. Ignoring.");
-          continue ARG;
+          continue;
         }
         if (!a.hasOption(Opt.BOOLEAN) && negated)
         {
           // used "no" with a non-boolean option
           Console.error("Argument '--" + NEGATESTRING + argName
                   + "' not a boolean option. Ignoring.");
-          continue ARG;
+          continue;
         }
         if (!a.hasOption(Opt.STRING) && equalPos > -1)
         {
@@ -512,7 +512,7 @@ public class ArgParser
           Console.error("Argument '--" + argName
                   + "' does not expect a value (given as '" + arg
                   + "').  Ignoring.");
-          continue ARG;
+          continue;
         }
         if (!a.hasOption(Opt.LINKED) && linkedId != null)
         {
@@ -520,7 +520,7 @@ public class ArgParser
           Console.error("Argument '--" + argName
                   + "' does not expect a linked id (given as '" + arg
                   + "'). Ignoring.");
-          continue ARG;
+          continue;
         }
 
         if (a.hasOption(Opt.STRING) && equalPos == -1)
@@ -531,7 +531,7 @@ public class ArgParser
             // no value to take for arg, which wants a value
             Console.error("Argument '" + a.getName()
                     + "' requires a value, none given. Ignoring.");
-            continue ARG;
+            continue;
           }
           val = argE.nextElement();
         }
diff --git a/src/jalview/bin/Commands.java b/src/jalview/bin/Commands.java
index c05194d..5b3e199 100644
--- a/src/jalview/bin/Commands.java
+++ b/src/jalview/bin/Commands.java
@@ -121,11 +121,12 @@ public class Commands
 
       boolean first = true;
       AlignFrame af;
-      OPEN: for (String openFile : ArgParser.getValues(m, Arg.OPEN))
+      for (String openFile : ArgParser.getValues(m, Arg.OPEN))
       {
         if (openFile == null)
-          continue OPEN;
+          continue;
 
+        argsWereParsed = true;
         if (first)
         {
           first = false;
@@ -150,7 +151,6 @@ public class Commands
             if (!(new File(openFile)).exists())
             {
               Console.warn("Can't find file '" + openFile + "'");
-              continue OPEN;
             }
           }
         }
@@ -391,7 +391,7 @@ public class Commands
       AlignFrame af = afMap.get(id);
       if (ArgParser.getArgValues(m, Arg.STRUCTURE) != null)
       {
-        STRUCTURE: for (String val : ArgParser.getValues(m, Arg.STRUCTURE))
+        for (String val : ArgParser.getValues(m, Arg.STRUCTURE))
         {
           SubVal subId = new SubVal(val);
           SequenceI seq = getSpecifiedSequence(af, subId);
@@ -421,14 +421,14 @@ public class Commands
           if (structureFile == null)
           {
             Console.warn("Not provided structure file with '" + val + "'");
-            continue STRUCTURE;
+            continue;
           }
 
           if (!structureFile.exists())
           {
             Console.warn("Structure file '"
                     + structureFile.getAbsoluteFile() + "' not found.");
-            continue STRUCTURE;
+            continue;
           }
 
           Console.debug("Using structure file "
-- 
1.7.10.2