From c8d150be394e2acf91a600a588492b44aa172052 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 18 Aug 2006 16:54:54 +0000
Subject: [PATCH] Check colourScheme is not null - jalview prior 2.5
 incompatibility

---
 src/jalview/gui/Jalview2XML_V1.java |    4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/Jalview2XML_V1.java b/src/jalview/gui/Jalview2XML_V1.java
index d8dfe62..bc44ab4 100755
--- a/src/jalview/gui/Jalview2XML_V1.java
+++ b/src/jalview/gui/Jalview2XML_V1.java
@@ -293,7 +293,9 @@ public class Jalview2XML_V1
                                 groups[i].getColour());
                     }
 
-                    cs.setThreshold(groups[i].getPidThreshold(), true);
+                    if(cs!=null)
+                      cs.setThreshold(groups[i].getPidThreshold(), true);
+
                 }
 
                 Vector seqs = new Vector();
-- 
1.7.10.2