From ca74dc496f023941a3cf5f452506cfb44db211ac Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Mon, 15 Dec 2008 10:33:26 +0000
Subject: [PATCH] warning for failed parsing of newick strings

---
 src/jalview/gui/Jalview2XML.java |    5 +++++
 1 file changed, 5 insertions(+)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 4664a6a..115477d 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -2257,6 +2257,11 @@ public class Jalview2XML
             tp.treeCanvas.ap = ap; // af.alignPanel;
 
           }
+	  if (tp==null)
+          {
+            warn("There was a problem recovering stored Newick tree: \n"+tree.getNewick());
+            continue;
+          }
 
           tp.fitToWindow.setState(tree.getFitToWindow());
           tp.fitToWindow_actionPerformed(null);
-- 
1.7.10.2