From caad315933db2600eaca9bf111932d5767ccb78b Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Tue, 2 May 2006 12:24:48 +0000 Subject: [PATCH] 2.08.1 --- help/html/features/search.gif | Bin 4924 -> 5043 bytes help/html/features/search.html | 18 ++++++++--------- help/html/menus/popupMenu.html | 43 ++++++++++++++++++++++++++++++---------- help/html/releases.html | 22 ++++++++++++++++++++ 4 files changed, 63 insertions(+), 20 deletions(-) diff --git a/help/html/features/search.gif b/help/html/features/search.gif index d57108588bece160bbb47bfe0b2e8ac306987aac..1c0ffb0ed26be3292b616636bfc1f3d158e8070c 100755 GIT binary patch delta 4104 zcmV+j5cluACbK6AM@dFFIbl-)Zm|gq0|{;b00{m7bqE}j9RnFXKHR~vqsNaRLy8

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Search

The search box is displayed by pressing Control and F or selecting "Find..." from the "Search" menu.

- +

"Find next" will find the next occurence of the specified and adjust the alignment window view to show it, and "Find all" highlights all matches for a pattern. The "New Feature" is a quick way to highlight and group residues matching the specified search pattern throughout the alignment.

Creating Features from Search Results

diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html index faf98e9..940e3cf 100755 --- a/help/html/menus/popupMenu.html +++ b/help/html/menus/popupMenu.html @@ -7,7 +7,7 @@ on the alignment or on a selected sequence name. It may not be accessible when in 'Cursor Mode' (toggled with the F2 key).

  • Link
    diff --git a/help/html/releases.html b/help/html/releases.html index eeae226..e37c5b5 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -9,6 +9,28 @@
    Issues Resolved
    +
    2.08.1
    + 2/5/06
    +
      +
    • Change case of selected region from Popup menu
    • +
    • Choose to match case when searching
    • +
    • Middle mouse button and mouse movemnet can compress / expand the visible + width and height of the alignment
    • +
    +
      +
    • Annotation Panel displays complete JNet results
    • +
    + + +
    2.08b
    + 18/4/06
    +   +
      +
    • Java 1.5 bug - InternalMessageDialog fix for threads
    • +
    • Righthand label on wrapped alignments shows correct value
    • +
    + +
    2.08
    10/4/06
      -- 1.7.10.2