From cc02d3050be98385d6558af2b2513bacce82417d Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 18 Oct 2006 13:02:17 +0000
Subject: [PATCH] set conserve and quality null if outofmemory

---
 src/jalview/gui/AlignViewport.java |    5 +++++
 1 file changed, 5 insertions(+)

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 9a7df7f..fb3d4df 100755
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -365,6 +365,8 @@ public class AlignViewport
         {
           javax.swing.SwingUtilities.invokeLater(new Runnable()
           {
+
+
             public void run()
             {
               javax.swing.JOptionPane.showInternalMessageDialog(Desktop.desktop,
@@ -376,6 +378,9 @@ public class AlignViewport
             }
           });
 
+          conservation = null;
+          quality = null;
+
           System.out.println("Conservation calculation: " + error);
           System.gc();
 
-- 
1.7.10.2