From cc407171f5746de69ca1d4af653984d778affeb9 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 31 Aug 2012 17:01:39 +0100
Subject: [PATCH] JAL-1159 patch for building menard branch on cruisecontrol

---
 build.xml |    5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/build.xml b/build.xml
index 6e3a2f2..ba0738e 100755
--- a/build.xml
+++ b/build.xml
@@ -89,7 +89,8 @@
 		<!-- Url path for WebStart in JNLP file -->
 		<property name="WebStartLocation" value="http://www.jalview.org/webstart" />
 		<!-- J2SE version needed for webstart launch -->
-		<property name="j2sev" value="1.6+"/>
+<!-- Anne's version needs 1.7 - should rebuild VARNA to java 1.6 for release -->
+		<property name="j2sev" value="1.7+"/>
 		<!-- build directory configuration -->
 		<property name="libDir" value="lib" />
 		<property name="resourceDir" value="resources" />
@@ -102,6 +103,7 @@
 		<property name="outputJar" value="jalview.jar" />
 		<!-- Jalview Applet JMol Jar Dependency -->
 		<property name="jmolJar" value="JmolApplet-12.2.4.jar" />
+		<property name="varnaJar" value="VARNAv3-9-dev.jar" />
 		<property name="jalviewLiteJar" value="jalviewApplet.jar" />
 		<!-- switch to indicate if we should obfuscate jalviewLite -->
 		<!--<property name="donotobfuscate" value="true"/> -->
@@ -131,6 +133,7 @@
 				<!-- the JmolApplet includes the JmolApplet console and the application javac seems to always try and build all packages 
 				-->
 				<include name="${jmolJar}" />
+				<include name="${varnaJar}" />
 			</fileset>
 
 		</path>
-- 
1.7.10.2