From cce9e4df53a94d9e7f841d25a6063c597f7a2ab9 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 2 Sep 2015 11:58:05 +0100
Subject: [PATCH] JAL-1772 non-functional test added. not doing any more work
 for 2.9 release

---
 test/jalview/io/Jalview2xmlTests.java |   65 +++++++++++++++++++++++++++++++++
 1 file changed, 65 insertions(+)

diff --git a/test/jalview/io/Jalview2xmlTests.java b/test/jalview/io/Jalview2xmlTests.java
index 2afcdc2..982be0c 100644
--- a/test/jalview/io/Jalview2xmlTests.java
+++ b/test/jalview/io/Jalview2xmlTests.java
@@ -30,6 +30,7 @@ import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
 import jalview.gui.AlignFrame;
 import jalview.gui.Desktop;
+import jalview.gui.Jalview2XML;
 import jalview.schemes.AnnotationColourGradient;
 import jalview.schemes.ColourSchemeI;
 
@@ -347,4 +348,68 @@ public class Jalview2xmlTests
             .getViewStyle()));
 
   }
+
+  /**
+   * test store and recovery of expanded views - 
+   * currently this is disabled since the 
+   * Desktop.explodeViews method doesn't seem 
+   * to result in the views being expanded to 
+   * distinct align frames when executed programmatically.
+   * @throws Exception
+   */
+  @Test(groups = { "Functional" }, enabled = false)
+  public void testStoreAndRecoverExpandedviews() throws Exception
+  {
+    AlignFrame af = new jalview.io.FileLoader()
+            .LoadFileWaitTillLoaded(
+            "examples/exampleFile_2_7.jar", FormatAdapter.FILE);
+    assertTrue("Didn't read in the example file correctly.", af != null);
+    String afid = af.getViewport().getSequenceSetId();
+    {
+      final AlignFrame xaf = af;
+      af = null;
+      new Thread(new Runnable()
+    {
+      @Override
+      public void run()
+      {
+          Desktop.instance.explodeViews(xaf);
+      }
+      }).start();
+      Thread.sleep(1000);
+    }
+    // int times = 0;
+    // while (++times < 5 && Desktop.getAlignFrames().length < )
+    // {
+    // Thread.sleep(300);
+    // }
+    int oldviews = Desktop.getAlignFrames().length;
+    Assert.assertEquals(
+            Desktop.getAlignFrames().length,
+            Desktop.getAlignmentPanels(afid).length);
+    File tfile = File.createTempFile("testStoreAndRecoverExpanded", ".jvp");
+    try
+    {
+      new Jalview2XML(false).saveState(tfile);
+    } catch (Error e)
+    {
+      Assert.fail("Didn't save the expanded view state", e);
+    } catch (Exception e)
+    {
+      Assert.fail("Didn't save the expanded view state", e);
+    }
+    Desktop.instance.closeAll_actionPerformed(null);
+    if (Desktop.getAlignFrames() != null)
+    {
+      Assert.assertEquals(Desktop.getAlignFrames().length, 0);
+    }
+    af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(
+            tfile.getAbsolutePath(), FormatAdapter.FILE);
+    Assert.assertNotNull(af);
+    Assert.assertEquals(Desktop.getAlignFrames().length,
+            Desktop.getAlignmentPanels(af.getViewport().getSequenceSetId()).length);
+    Assert.assertEquals(oldviews,
+            Desktop.getAlignmentPanels(af.getViewport().getSequenceSetId()).length);
+  }
+
 }
-- 
1.7.10.2