From cd574299875e128d38eadee2efb946725e07bd92 Mon Sep 17 00:00:00 2001
From: kiramt <k.mourao@dundee.ac.uk>
Date: Mon, 8 May 2017 08:54:41 +0100
Subject: [PATCH] JAL-2512 Fix to show non-gap positions in None colour scheme

---
 src/jalview/gui/SequenceRenderer.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 1c0420d..91c3f0f 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -137,7 +137,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
    */
   void getBoxColour(ResidueShaderI shader, SequenceI seq, int i)
   {
-    if (shader != null)
+    if (shader.getColourScheme() != null)
     {
       resBoxColour = shader.findColour(seq.getCharAt(i),
               i, seq);
-- 
1.7.10.2