From ce6edf5c9421ce38f625886885ed2cd8f506f08d Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 3 Aug 2017 14:05:14 +0100
Subject: [PATCH 1/1] =?utf8?q?JAL-2418=20what=E2=80=99s=20new=20-=20faster=20?=
 =?utf8?q?PCA,=20calculations=20UI=20and=20score=20model=20framework?=
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---
 help/html/whatsNew.html |    9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 4b82179..8a0436d 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -32,6 +32,15 @@
     highlights are below.
   </p>
   <ul>
+    <li><strong>New UI, and faster and more configurable implementation for PCA, Neighbour-Joining and UPGMA Trees</strong><br>
+      Menu entries for calculating PCA and different types of tree have
+      been replaced by a single <em>Calculations</em> dialog box. The
+      underlying implementation for the PCA and tree calculations have been
+      made faster and more memory efficient. A new framework has also been
+      created for the score models used to calculate distances between
+      sequences. This framework allows import of substitution matrices in
+      NCBI and AAIndex format, and custom score models to be created via a
+      groovy script.</li>
     <li><strong>Update to JABAWS 2.2</strong><br />Jalview's
       alignment, protein conservation analysis, and protein disorder and
       RNA secondary structure prediction services are now provided by <a
-- 
1.7.10.2