From d1006f9d7b337300ef43a6d3472ecaba5798aa82 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Fri, 11 Nov 2016 08:51:36 +0000 Subject: [PATCH] JAL-2295 sorted properties for readability --- test/jalview/ext/rbvi/chimera/testProps.jvprops | 137 +++++++++++------------ 1 file changed, 67 insertions(+), 70 deletions(-) diff --git a/test/jalview/ext/rbvi/chimera/testProps.jvprops b/test/jalview/ext/rbvi/chimera/testProps.jvprops index 95da22e..5c08d8e 100644 --- a/test/jalview/ext/rbvi/chimera/testProps.jvprops +++ b/test/jalview/ext/rbvi/chimera/testProps.jvprops @@ -1,85 +1,82 @@ -#---JalviewX Properties File--- -#Fri Apr 25 09:54:25 BST 2014 -SCREEN_Y=768 -SCREEN_X=936 -SHOW_WSDISCOVERY_ERRORS=true -LATEST_VERSION=2.8.0b1 -SHOW_CONSERVATION=true +ANNOTATIONCOLOUR_MAX=ff0000 +ANNOTATIONCOLOUR_MIN=ffc800 +ANTI_ALIAS=false +AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton +AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle +AUTO_CALC_CONSENSUS=true +BLC_JVSUFFIX=true +BUILD_DATE=01 November 2013 +CLUSTAL_JVSUFFIX=true +DAS_ACTIVE_SOURCE=uniprot\t +DAS_LOCAL_SOURCE= +DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/ +DEFAULT_COLOUR=None +DEFAULT_FILE_FORMAT=FASTA +FASTA_JVSUFFIX=true +FIGURE_AUTOIDWIDTH=false +FIGURE_USERIDWIDTH= +FONT_NAME=SansSerif +FONT_SIZE=10 +FONT_STYLE=plain +GAP_SYMBOL=- +ID_ITALICS=true +JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM +JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550 +JALVIEW_RSS_WINDOW_SCREEN_X=0 +JALVIEW_RSS_WINDOW_SCREEN_Y=0 +JAVA_CONSOLE_SCREEN_HEIGHT=162 JAVA_CONSOLE_SCREEN_WIDTH=450 +JAVA_CONSOLE_SCREEN_X=830 +JAVA_CONSOLE_SCREEN_Y=475 +JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples -ID_ITALICS=true -SORT_ALIGNMENT=No sort -SHOW_IDENTITY=true -WSMENU_BYHOST=false -SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$ -SHOW_FULLSCREEN=false -RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar -FONT_NAME=SansSerif -BLC_JVSUFFIX=true -VERSION_CHECK=false -YEAR=2011 -SHOW_DBREFS_TOOLTIP=true +LATEST_VERSION=2.8.0b1 MSF_JVSUFFIX=true -SCREENGEOMETRY_HEIGHT=1600 -JAVA_CONSOLE_SCREEN_Y=475 -JAVA_CONSOLE_SCREEN_X=830 +NOQUESTIONNAIRES=true +PAD_GAPS=false PFAM_JVSUFFIX=true +PILEUP_JVSUFFIX=true PIR_JVSUFFIX=true -STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar -JAVA_CONSOLE_SCREEN_HEIGHT=162 PIR_MODELLER=false -GAP_SYMBOL=- -SHOW_QUALITY=true +RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out +RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar +RIGHT_ALIGN_IDS=false +RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$ +SCREEN_HEIGHT=650 +SCREEN_WIDTH=900 +SCREEN_X=936 +SCREEN_Y=768 +SCREENGEOMETRY_HEIGHT=1600 +SCREENGEOMETRY_WIDTH=2560 +SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$ +SHOW_ANNOTATIONS=true +SHOW_CONSENSUS_HISTOGRAM=true +SHOW_CONSENSUS_LOGO=false +SHOW_CONSERVATION=true +SHOW_DBREFS_TOOLTIP=true +SHOW_ENFIN_SERVICES=true +SHOW_FULLSCREEN=false +SHOW_GROUP_CONSENSUS=false SHOW_GROUP_CONSERVATION=false +SHOW_IDENTITY=true +SHOW_JAVA_CONSOLE=false +SHOW_JVSUFFIX=true SHOW_JWS2_SERVICES=true SHOW_NPFEATS_TOOLTIP=true -FONT_STYLE=plain -ANTI_ALIAS=false -SORT_BY_TREE=false -RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$ -AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton -JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328 -SHOW_GROUP_CONSENSUS=false -SHOW_CONSENSUS_HISTOGRAM=true SHOW_OVERVIEW=false -AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle -FIGURE_AUTOIDWIDTH=false -SCREEN_WIDTH=900 -ANNOTATIONCOLOUR_MIN=ffc800 +SHOW_QUALITY=true SHOW_STARTUP_FILE=false -RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out -DEFAULT_FILE_FORMAT=FASTA -SHOW_JAVA_CONSOLE=false -VERSION=2.8b1 -FIGURE_USERIDWIDTH= -WSMENU_BYTYPE=false -DEFAULT_COLOUR=None -NOQUESTIONNAIRES=true -JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM -BUILD_DATE=01 November 2013 -PILEUP_JVSUFFIX=true -SHOW_CONSENSUS_LOGO=false -SCREENGEOMETRY_WIDTH=2560 -SHOW_ANNOTATIONS=true -JALVIEW_RSS_WINDOW_SCREEN_Y=0 -USAGESTATS=false -JALVIEW_RSS_WINDOW_SCREEN_X=0 SHOW_UNCONSERVED=false -SHOW_JVSUFFIX=true -DAS_LOCAL_SOURCE= -SCREEN_HEIGHT=650 -ANNOTATIONCOLOUR_MAX=ff0000 -AUTO_CALC_CONSENSUS=true -FASTA_JVSUFFIX=true -DAS_ACTIVE_SOURCE=uniprot\t -JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws -PAD_GAPS=false -CLUSTAL_JVSUFFIX=true -SHOW_ENFIN_SERVICES=true -FONT_SIZE=10 -RIGHT_ALIGN_IDS=false +SHOW_WSDISCOVERY_ERRORS=true +SORT_ALIGNMENT=No sort +SORT_BY_TREE=false +STARTUP_FILE= +USAGESTATS=false USE_PROXY=false +VERSION_CHECK=false +VERSION=2.8b1 WRAP_ALIGNMENT=false -#DAS_REGISTRY_URL=http\://www.dasregistry.org/das/ # retired 01/05/2015 -DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/ +WSMENU_BYHOST=false +WSMENU_BYTYPE=false +YEAR=2011 -- 1.7.10.2