From d1a58585358deed317674daeeac5fb5be66637ab Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 25 Oct 2006 14:57:02 +0000
Subject: [PATCH] Check hiddenSequence before placing in tmp

---
 src/jalview/datamodel/HiddenSequences.java |    6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/jalview/datamodel/HiddenSequences.java b/src/jalview/datamodel/HiddenSequences.java
index 17a6c11..9a4e7c6 100755
--- a/src/jalview/datamodel/HiddenSequences.java
+++ b/src/jalview/datamodel/HiddenSequences.java
@@ -75,8 +75,8 @@ public class HiddenSequences
     {
       if (i > deletionIndex)
         tmp[i-1] = hiddenSequences[i];
-      else
-        tmp[i] = hiddenSequences[i];
+      else if(hiddenSequences[i]!=null)
+       tmp[i] = hiddenSequences[i];
     }
 
    hiddenSequences = tmp;
@@ -111,7 +111,7 @@ public class HiddenSequences
     alignmentIndex = adjustForHiddenSeqs(alignmentIndex);
 
     if(hiddenSequences[alignmentIndex]!=null)
-    System.out.println("ERROR!!!!!!!!!!!");
+      System.out.println("ERROR!!!!!!!!!!!");
 
     hiddenSequences[alignmentIndex] = sequence;
 
-- 
1.7.10.2