From d309b294ee45478e45c38fef85bd00a2cae9b544 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Fri, 18 Jan 2013 22:48:33 +0000 Subject: [PATCH] inprogress --- forester/ruby/scripts/x.rb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 forester/ruby/scripts/x.rb diff --git a/forester/ruby/scripts/x.rb b/forester/ruby/scripts/x.rb new file mode 100644 index 0000000..cb70c70 --- /dev/null +++ b/forester/ruby/scripts/x.rb @@ -0,0 +1,15 @@ +PRG = "/home/czmasek/SOFTWARE/FORESTER/DEV/forester/forester/ruby/evoruby/exe/hsp.rb" +Dir.foreach(".") do |f| + next if f == '.' or f == '..' + if f =~ /^([A-Z0-9]{3,6})\.hmmscan_260/ + taxon = $1 + cmd = "#{PRG} -ie=10 -a -pe=1 -m=RRMa -s=#{taxon} #{taxon}.hmmscan_260 #{taxon}_ie10_domain_table > #{taxon}_ie10_summary_table.txt" + puts cmd + output = IO.popen( cmd ) + elsif f =~ /^([A-Z0-9]{3,6})_cdhit090\.hmmscan_260/ + taxon = $1 + cmd = "#{PRG} -ie=10 -a -pe=1 -m=RRMa -s=#{taxon} #{taxon}_cdhit090.hmmscan_260 #{taxon}_cdhit090_ie10_domain_table > #{taxon}_cdhit090_ie10_summary_table.txt" + puts cmd + output = IO.popen( cmd ) + end +end \ No newline at end of file -- 1.7.10.2