From d31fcbf4f32ab6a6091b8162d46cb68072730dfd Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Thu, 16 Jun 2005 14:50:15 +0000
Subject: [PATCH] better clustalw reference

---
 src/jalview/ws/MsaWServices.java |   66 +++++++++++++++++++-------------------
 1 file changed, 33 insertions(+), 33 deletions(-)

diff --git a/src/jalview/ws/MsaWServices.java b/src/jalview/ws/MsaWServices.java
index ac89f68..84c07a2 100755
--- a/src/jalview/ws/MsaWServices.java
+++ b/src/jalview/ws/MsaWServices.java
@@ -1,40 +1,40 @@
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
 */
 package jalview.ws;
 
 import java.util.Hashtable;
 
 
-/**
- * <p>Title: MsaWServices </p>
- *
- * <p>Description: Registry of MsaWSI style services </p>
- *
- * <p>Copyright: Copyright (c) 2004</p>
- *
- * <p>Company: Dundee University</p>
- *
- * @author not attributable
- * @version 1.0
+/**
+ * <p>Title: MsaWServices </p>
+ *
+ * <p>Description: Registry of MsaWSI style services </p>
+ *
+ * <p>Copyright: Copyright (c) 2004</p>
+ *
+ * <p>Company: Dundee University</p>
+ *
+ * @author not attributable
+ * @version 1.0
  */
-/**
- * TODO: MsaWServices will be set from properties and be dynamically discovered.
+/**
+ * TODO: MsaWServices will be set from properties and be dynamically discovered.
  */
 public class MsaWServices {
     public static Hashtable info;
@@ -45,16 +45,16 @@ public class MsaWServices {
             new String[] {
                 "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",
                 "ClustalW Alignment job",
-                
+
             "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +
                 " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." +
-                " Nucleic Acids Research, submitted, June 1994."
+                " Nucleic Acids Research, 22 4673-4680"
             });
         info.put("MuscleWS",
             new String[] {
                 "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",
                 "Muscle Alignment job",
-                
+
             "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment " +
                 "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."
             });
-- 
1.7.10.2