From d35ac65b05da0e81637bdd8daca2233406bf086d Mon Sep 17 00:00:00 2001
From: jprocter
Date: Thu, 4 Nov 2010 14:56:51 +0000
Subject: [PATCH] dialog to report any problematic web service URLs ( JAL-343
)
---
help/html/webServices/index.html | 18 ++++++++++--------
help/html/webServices/invalidurldialog.gif | Bin 0 -> 9370 bytes
help/html/webServices/webServicesPrefs.html | 19 +++++++++++++++++++
help/html/webServices/wsprefs.gif | Bin 15840 -> 18473 bytes
4 files changed, 29 insertions(+), 8 deletions(-)
create mode 100644 help/html/webServices/invalidurldialog.gif
diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html
index 25a5bef..a12d7b3 100755
--- a/help/html/webServices/index.html
+++ b/help/html/webServices/index.html
@@ -44,20 +44,22 @@ bioinformatic data retrieval and analysis.
Services for submitting IDs and sequences to external
bioinformatics services such as Envision2.
Programs for multiple sequence alignment, made available via
- Java Bioinformatic
- Analysis Web Service (JABAWS) servers.
+ Java Bioinformatic Analysis Web Service
+ (JABAWS) servers.
The Web Services Preference panel
controls the display and appearance of the submission and analysis
services in the Web Services menu.
-
+ If Jalview encounters problems accessing any services, it may
+ display a warning dialog
+ box (this can be turned off using the web services preferences tab).
-Jalview's distributed computations are SOAP based services
-exposing protein sequence alignment and secondary structure prediction
-programs. These services actually run on the cluster based in the School
-of Life Sciences, University of Dundee, and are maintained by the Barton
-group.
+More about Jalview's Web Services
+Jalview's distributed computations are SOAP based services exposing
+protein sequence alignment and secondary structure prediction programs.
+These services actually run on the cluster based in the School of Life
+Sciences, University of Dundee, and are maintained by the Barton group.
Envision2 Services
Since version 2.5, Jalview has included a client to enable the
user to submit one or more sequences or sequence IDs to analysis
diff --git a/help/html/webServices/invalidurldialog.gif b/help/html/webServices/invalidurldialog.gif
new file mode 100644
index 0000000000000000000000000000000000000000..acd6ce7b09cf971985cc8ea31c4efe515eb78e09
GIT binary patch
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The web services preferences panel was added in Jalview
2.6
+Web Services Invalid
+URL warnings
+Jalview may inform you of any problems contacting the web services by
+showing a dialog box like the one below:
+
+Web Services Invalid URL Warning dialog box
+
+Note: this warning will be shown if you are running the Jalview desktop
+without any network connection, or if you have configured
+JABA services
+which cannot be accessed from your location. Should you wish to disable
+these warnings, then uncheck the
+Display warnings
+check box in the web services preferences.
+
+The web services warnings dialog box was added in
+Jalview 2.6.1