From d3b4cd4f993c33cc16e0d225e9d6fe862058d945 Mon Sep 17 00:00:00 2001
From: Ben Soares <bsoares@dundee.ac.uk>
Date: Mon, 9 Mar 2020 12:09:03 +0000
Subject: [PATCH] JAL-3394 Made Categories line configurable/readable in
 gradle.properties as will be used more generically in
 future

---
 build.gradle                                  |    1 +
 gradle.properties                             |    3 +-
 utils/install4j/install4j8_template.install4j |   59 +++++++++----------------
 3 files changed, 24 insertions(+), 39 deletions(-)

diff --git a/build.gradle b/build.gradle
index ca73859..0afdbf4 100644
--- a/build.gradle
+++ b/build.gradle
@@ -1363,6 +1363,7 @@ task installers(type: com.install4j.gradle.Install4jTask) {
     'GETDOWN_INSTALL_DIR': getdown_install_dir,
     'INFO_PLIST_FILE_ASSOCIATIONS_FILE': install4j_info_plist_file_associations,
     'BUILD_DIR': install4jBuildDir,
+    'UNIX_DESKTOP_ADDITIONS': install4j_unix_desktop_additions,
   ]
 
   destination = "${jalviewDir}/${install4jBuildDir}"
diff --git a/gradle.properties b/gradle.properties
index e4f0ebf..74685aa 100644
--- a/gradle.properties
+++ b/gradle.properties
@@ -119,9 +119,10 @@ install4j_info_plist_file_associations = file_associations_auto-Info_plist.xml
 install4j_installer_file_associations = file_associations_auto-install4j8.xml
 #install4j_DMG_uninstaller_app_files = uninstall_old_jalview_files.xml
 install4j_build_dir = build/install4j
-install4j_media_types = windows,macosArchive,linuxRPM,linuxDeb,unixArchive,unixInstaller
+install4j_media_types = windows,macosArchive,unixArchive,unixInstaller
 install4j_faster = false
 install4j_installer_name = Jalview Installer
+install4j_unix_desktop_additions = Categories=Science;Biology;Java;
 
 OSX_KEYSTORE =
 OSX_KEYPASS =
diff --git a/utils/install4j/install4j8_template.install4j b/utils/install4j/install4j8_template.install4j
index 8a0ea4f..961c5c0 100644
--- a/utils/install4j/install4j8_template.install4j
+++ b/utils/install4j/install4j8_template.install4j
@@ -38,6 +38,7 @@
       <variable name="GETDOWN_ALT_DIR" value="alt" />
       <variable name="GETDOWN_INSTALL_DIR" value="install" />
       <variable name="INFO_PLIST_FILE_ASSOCIATIONS_FILE" value="file_associations_auto-Info_plist.xml" />
+      <variable name="UNIX_DESKTOP_ADDITIONS" value="Categories=Science;Biology;Java;" />
     </variables>
     <codeSigning macEnabled="true" macPkcs12File="${compiler:OSX_KEYSTORE}" />
   </application>
@@ -126,7 +127,7 @@
         <id>2350</id>
         <id>2450</id>
       </macStaticAssociationActions>
-      <desktopFile>Categories=Science;Biology;Java;</desktopFile>
+      <desktopFile>${compiler:UNIX_DESKTOP_ADDITIONS}</desktopFile>
       <infoPlist>${compiler:file("${compiler:INFO_PLIST_FILE_ASSOCIATIONS_FILE}")}</infoPlist>
       <iconImageFiles>
         <file path="${compiler:JALVIEW_DIR}/resources/images/JalviewLogo_Huge.png" />
@@ -1061,42 +1062,6 @@ return console.askYesNo(message, true);
     </styles>
   </installerGui>
   <mediaSets>
-    <linuxDeb name="Jalview .deb Package" id="153" mediaFileName="jalview-${compiler:JALVIEW_VERSION}" dependencies="openjdk-8-jre" bzip="true" description="Jalview Desktop" maintainerEmail="help@jalview.org">
-      <excludedComponents>
-        <component id="1031" />
-        <component id="1155" />
-        <component id="1156" />
-        <component id="1276" />
-        <component id="2110" />
-      </excludedComponents>
-      <excludedLaunchers>
-        <launcher id="737" />
-      </excludedLaunchers>
-      <exclude>
-        <entry defaultFileset="true" />
-        <entry filesetId="734" />
-        <entry filesetId="880" />
-        <entry filesetId="882" />
-      </exclude>
-    </linuxDeb>
-    <linuxRPM name="Jalview RPM Package" id="570" mediaFileName="jalview-${compiler:JALVIEW_VERSION}" dependencies="java-1.8.0-openjdk" arch="noarch">
-      <excludedComponents>
-        <component id="1031" />
-        <component id="1155" />
-        <component id="1156" />
-        <component id="1276" />
-        <component id="2110" />
-      </excludedComponents>
-      <excludedLaunchers>
-        <launcher id="737" />
-      </excludedLaunchers>
-      <exclude>
-        <entry defaultFileset="true" />
-        <entry filesetId="734" />
-        <entry filesetId="880" />
-        <entry filesetId="882" />
-      </exclude>
-    </linuxRPM>
     <windows name="Windows x64 EXE Installer" id="743" mediaFileName="${compiler:sys.shortName}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" runPostProcessor="true" postProcessor="${compiler:JSIGN_SH} $EXECUTABLE" customInstallBaseDir="~/AppData/Local">
       <excludedComponents>
         <component id="1155" />
@@ -1151,7 +1116,7 @@ return console.askYesNo(message, true);
         <symlink name="Uninstall Old Jalview (optional).app" target="Jalview.app/Contents/Resources/app/Uninstall Old Jalview.app" />
       </topLevelFiles>
     </macosArchive>
-    <unixInstaller name="Unix Shell Installer" id="1595" mediaFileName="${compiler:sys.shortName}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" customInstallBaseDir="~/opt/">
+    <unixInstaller name="Linux x64 Shell Installer" id="1595" mediaFileName="${compiler:sys.shortName}-${compiler:JALVIEW_VERSION}-linux_x64-java_${compiler:JAVA_INTEGER_VERSION}" customInstallBaseDir="~/opt/">
       <excludedComponents>
         <component id="1155" />
         <component id="1156" />
@@ -1185,6 +1150,23 @@ return console.askYesNo(message, true);
       </exclude>
       <jreBundle includedJre="${compiler:LINUX_JAVA_VM_TGZ}" manualJreEntry="true" />
     </unixArchive>
+    <unixInstaller name="Unix Shell Installer" id="2639" mediaFileName="${compiler:sys.shortName}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" customInstallBaseDir="~/opt/">
+      <excludedComponents>
+        <component id="1155" />
+        <component id="1156" />
+        <component id="1276" />
+        <component id="1881" />
+        <component id="2110" />
+      </excludedComponents>
+      <exclude>
+        <entry defaultFileset="true" />
+        <entry filesetId="880" />
+        <entry filesetId="882" />
+        <entry filesetId="1873" />
+        <entry filesetId="2105" />
+      </exclude>
+      <jreBundle includedJre="${compiler:LINUX_JAVA_VM_TGZ}" manualJreEntry="true" />
+    </unixInstaller>
   </mediaSets>
   <buildIds>
     <mediaSet refId="153" />
@@ -1194,5 +1176,6 @@ return console.askYesNo(message, true);
     <mediaSet refId="878" />
     <mediaSet refId="1595" />
     <mediaSet refId="1596" />
+    <mediaSet refId="2639" />
   </buildIds>
 </install4j>
-- 
1.7.10.2